New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2719155	38 (0.780)	3 (0.070)	3/246	NT	7.3%	coding (282/585 nt)	nfuA	Fe/S biogenesis protein NfuA
	?	NC_002947	= 2719178	41 (0.890)					coding (305/585 nt)	nfuA	Fe/S biogenesis protein NfuA

GCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATTGCCGTACTGCAGTTCGGTGGT  >  NC_002947/2719032‑2719323                                                                                                                                                    |                                                                                                                                                  gCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCga                                                                                                                                                 <  2:226168‑M2/149‑3 (MQ=255)  ccTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCgat                                                                                                                                                <  2:55869‑M2/149‑4 (MQ=255)      acgacACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatgg                                                                                                                                              >  6:19676‑M2/1‑142 (MQ=255)        gacACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCaa                                                                                                                                          >  4:93225/1‑149 (MQ=255)         acacGGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtc                                                                                                                                            >  5:239682‑M2/1‑139 (MQ=255)         acacCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtc                                                                                                                                            <  6:239682‑M2/146‑8 (MQ=255)           acCGCCGTGGGTATGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATTGTCAACGa                                                                                                                                       <  2:214735/149‑1 (MQ=255)            ccgccgTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGaa                                                                                                                                      <  3:178541/149‑1 (MQ=255)                   gggTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGcc                                                                                                                               <  1:298958/149‑1 (MQ=255)                          aaaaGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCTGGGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAACACAGCCCGATc                                                                                                                          >  1:218307/1‑148 (MQ=255)                               cTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCaacgaac                                                                                                                   <  3:93225/149‑1 (MQ=255)                                       cTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCa                                                                                                             <  5:174574/147‑1 (MQ=255)                                       cTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAac                                                                                                           >  2:115796/1‑149 (MQ=255)                                       cTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAac                                                                                                           <  5:104287/149‑1 (MQ=255)                                            cTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGAt                                                                                                                           >  2:12960/1‑128 (MQ=255)                                            cTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGAt                                                                                                                           <  1:12960/128‑1 (MQ=255)                                             ttGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAac                                                                                                           >  5:265997/1‑143 (MQ=255)                                             ttGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAac                                                                                                           <  6:265997/143‑1 (MQ=255)                                                      tCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGAcc                                                                                            >  4:129545/1‑149 (MQ=255)                                                                cTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCGGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAAcc                                                                                  <  8:95462/149‑1 (MQ=255)                                                                         aaGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCaacgaa                                                                                                                    <  7:289588/107‑1 (MQ=255)                                                                         aaGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCaacgaa                                                                                                                    >  8:289588/1‑107 (MQ=255)                                                                          aGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTgg                                                                         <  7:41309/149‑1 (MQ=255)                                                                                gcTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATc                                                                                      >  7:186905/1‑130 (MQ=255)                                                                                gcTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATc                                                                                      <  8:186905/130‑1 (MQ=255)                                                                                gcTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGgccagc                                                                    >  7:42040/1‑148 (MQ=255)                                                                                gcTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGgccagc                                                                    >  7:59788/1‑148 (MQ=255)                                                                                   ggTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCAt                                                                 >  2:209687/1‑148 (MQ=255)                                                                                   ggTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCAt                                                                 <  1:209687/148‑1 (MQ=255)                                                                                              ccACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATgg                                                               >  4:278157/1‑139 (MQ=255)                                                                                              ccACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATgg                                                               <  3:278157/139‑1 (MQ=255)                                                                                               cACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGTCCGAGATCAACCCCGGCCTg                                                                          <  1:45886/127‑1 (MQ=255)                                                                                               cACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTg                                                                          >  2:45886/1‑127 (MQ=255)                                                                                                accgaccgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAg                                                   >  7:76797/1‑149 (MQ=255)                                                                                                      cgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGATCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggt                                             <  1:226168/149‑1 (MQ=255)                                                                                                      cgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggt                                             <  3:129545/149‑1 (MQ=255)                                                                                                      cgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggt                                             <  8:59788/149‑1 (MQ=255)                                                                                                      cgCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggt                                             >  2:147200/1‑149 (MQ=255)                                                                                                       gCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtggtg                                            <  1:55869/149‑1 (MQ=255)                                                                                                                     cTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtcagctggccacccatgcggtcggtggcgtagtcgcccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagctttt                                                <  3:208328‑M2/131‑100 (MQ=255)                                                                                                                     cTGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtcagctggccacccatgcggtcggtggcgtagtcgaccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagctttt                                                >  4:208328‑M2/1‑32 (MQ=255)                                                                                                                      tGACCATCAAGGCGCCAAACGCCAAGGTGCCgatggtcagctggccacccatgcggtcggtggcgtagtcgaccagcgcgtcttccaggaagggtacgctgacggcgtcaaggtaagcagtgaagcttttcagacccacggcggtgtcg                             <  2:271644‑M2/149‑119 (MQ=255)                                                                                                                          cATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCACGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCa                         >  2:302099/1‑149 (MQ=255)                                                                                                                              aaGGCGCCAAACTCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtg                                               >  4:73051/1‑123 (MQ=255)                                                                                                                              aaGGCGCCAAACTCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCtg                                               <  3:73051/123‑1 (MQ=255)                                                                                                                               aGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATTGcc                    >  6:281459/1‑149 (MQ=255)                                                                                                                                  cgcCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATTGCCGTa                 <  2:91587/149‑1 (MQ=255)                                                                                                                                   gcCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATTGCCGTAc                >  6:210480/1‑149 (MQ=255)                                                                                                                                     cAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGATCGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATTGCCGTACTg              <  8:42040/149‑1 (MQ=255)                                                                                                                                     cAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATTGCCGTACTg              <  1:147200/149‑1 (MQ=255)                                                                                                                                      aaaCGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGc                                                  <  4:200348/112‑1 (MQ=255)                                                                                                                                             aaGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATTGCCGTACTGCAGTTCgg      <  1:115796/149‑1 (MQ=255)                                                                                                                                                 tGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATTGCCGTACTGCAGTTCggtggt  <  5:281459/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  GCCTGACGACACCGCCGTGGGTCTGAAAAGCTTCACTGCTTACCTTGACGCCGTCAGCGTACCCTTCCT‑GGAAGACGCGCTGGTCGACTACGCCACCGACCGCATGGGTGGCCAGCTGACCATCAAGGCGCCAAACGCCAAGGTGCCGATGGTCAACGAAGACAGCCCGATCAACGAACGTATCAACTACTACCTACAGACCGAGATCAACCCCGGCCTGGCCAGCCATGGCGGCCAGGTGAGCCTGGTGGACGTGGTCGATGACGGCATTGCCGTACTGCAGTTCGGTGGT  >  NC_002947/2719032‑2719323

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.