New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3150028	41 (0.840)	3 (0.060)	3/254	NT	7.1%	coding (132/1131 nt)	PP_2766	long‑chain‑fatty acid‑‑CoA ligase‑like protein
	?	NC_002947	= 3150060	39 (0.820)					coding (164/1131 nt)	PP_2766	long‑chain‑fatty acid‑‑CoA ligase‑like protein

GCCTGAGGTGCGCGGCCATGCATGAGGCGCTCGCGAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCG  >  NC_002947/3149880‑3150175                                                                                                                                                     |                                                                                                                                                    gCCTGAGGTGCGCGGCCATGCATGAGGCGCTCGCGAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCC                                                                                                                                                     >  4:4488‑M1/1‑149 (MQ=255)           cgcgGCCATGCATGAGGCGCTCGCGAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCa                                                                                                                                             >  7:192394/1‑147 (MQ=255)            gcgGCCATGCATGAGGCGCTCGCGAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCagag                                                                                                                                          >  6:100377/1‑149 (MQ=255)                ccATGCATGAGGCGCTCGCGAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTg                                                                                                                                      <  3:4488/149‑1 (MQ=255)                ccATGCATGAGGCGCTCGCGAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTg                                                                                                                                      >  2:70178/1‑149 (MQ=255)                  atgcatgAGGCGCTCGCGAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGc                                                                                                                                    >  6:132993/1‑149 (MQ=255)                        gAGGCGCTCGCGAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCgg                                                                                                                              >  2:24973/1‑149 (MQ=255)                                 gcgAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTgcgc                                                                                                                       <  5:100377/147‑1 (MQ=255)                                   gAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCtcgcgcagcccggtggccaggctctgcacctcgg                                                                                                                   <  3:201322‑M1/149‑35 (MQ=255)                                    aacaacCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAggc                                                                                                                  >  1:70178‑M2/1‑146 (MQ=255)                                       aacCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCgg                                                                                                               <  8:192394/149‑1 (MQ=255)                                       aacCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCgg                                                                                                               <  4:211757/149‑1 (MQ=255)                                         ccTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCt                                                                                                             >  2:29449/1‑149 (MQ=255)                                              cGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTcgcg                                                                                                        >  6:110996/1‑149 (MQ=255)                                                  cAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccg                                                                                                    >  1:233427/1‑149 (MQ=255)                                                  cAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccg                                                                                                    <  5:286655/149‑1 (MQ=255)                                                  cAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccg                                                                                                    >  2:284851/1‑149 (MQ=255)                                                   aGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccgg                                                                                                   <  3:196091/149‑1 (MQ=255)                                                   aGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccgg                                                                                                   <  4:255648/149‑1 (MQ=255)                                                       tGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGa                                                                                                >  8:267904/1‑148 (MQ=255)                                                            gCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGcc                                                                                           <  5:132993/148‑1 (MQ=255)                                                            gCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCct                                                                                          >  6:210843/1‑149 (MQ=255)                                                            gCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCct                                                                                          >  2:90866/1‑149 (MQ=255)                                                             cccGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCctg                                                                                         <  5:110996/149‑1 (MQ=255)                                                              ccGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCctgc                                                                                        >  1:303664/1‑149 (MQ=255)                                                                      aTCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCtcgcgcagcccggtggccaggctctgcacctcggc                                                                                                                  <  4:6554‑M1/115‑36 (MQ=255)                                                                      aTCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCtcgcgcagcccggtggccaggctctgcacctcggc                                                                                                                  >  3:6554‑M1/1‑80 (MQ=255)                                                                      aTCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCctg                                                                                         >  1:158909/1‑140 (MQ=255)                                                                      aTCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCctg                                                                                         <  2:158909/140‑1 (MQ=255)                                                                                ggCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCCGCGACAGCCTGCTGATCGTCAGCCGGCcgc                                                                      <  1:24973/149‑1 (MQ=255)                                                                                  cGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCgcgc                                                                    >  6:166555/1‑149 (MQ=255)                                                                                          gcgttgcgCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAgg                                                             <  2:233427/148‑1 (MQ=255)                                                                                                cgcCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCgctgct                                                      <  7:267904/149‑1 (MQ=255)                                                                                                   cacaAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTgg                                                    >  7:132392/1‑148 (MQ=255)                                                                                                    acaAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCg                                                                                                 <  2:248474/102‑1 (MQ=255)                                                                                                    acaAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGc                                                   >  6:244371/1‑148 (MQ=255)                                                                                                      aaGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCgg                                                                                                               >  3:53124/1‑86 (MQ=255)                                                                                                      aaGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCgg                                                                                                               <  4:53124/86‑1 (MQ=255)                                                                                                      aaGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAg                                                <  5:166555/149‑1 (MQ=255)                                                                                                               ggCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTggcggc                                       >  6:151239/1‑149 (MQ=255)                                                                                                                  cTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCa                                    <  5:210843/149‑1 (MQ=255)                                                                                                                     tgGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCGGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGt                                  <  5:244371/148‑1 (MQ=255)                                                                                                                        cAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCt                              <  2:303664/149‑1 (MQ=255)                                                                                                                            cgcgcAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGggc                          <  1:284851/149‑1 (MQ=255)                                                                                                                                   cTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCt                                                                 <  4:176867/103‑1 (MQ=255)                                                                                                                                   cTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCt                                                                 >  3:176867/1‑103 (MQ=255)                                                                                                                                                   gCCtcgcgcagcccggtggccaggctctgcacctcggccagcagttgcgcccagctgcgcgcctgccacaggcctagacgcttgtggcgcaacgcaacgtccgccccacgttgatgtgcccgggccagcaagctggccggcaggttgtt   >  1:70178‑M1/1‑3 (MQ=255)                                                                                                                                                   gCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAggccagcagttgcgcccagctgcgcgcctgccacaggcctagacgcttgtggcgcaacgcaacgtccgccccacgttgat                                     <  4:6554‑M2/115‑81 (MQ=255)                                                                                                                                                   gCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAggccagcagttgcgcccagctgcgcgcctgccacaggcctagacgcttgtggcgcaacgcaacgtccgccccacgttgat                                     >  3:6554‑M2/1‑35 (MQ=255)                                                                                                                                                    ccGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAggccagcagttgcgcccagctgcgcgcctgccacaggcctagacgcttgtggcgcaacgcaacgtccgccccacgttgatgtgcccgggccagcaagctggccggcaggttgttc  <  3:201322‑M2/149‑116 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCCTGAGGTGCGCGGCCATGCATGAGGCGCTCGCGAACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCG  >  NC_002947/3149880‑3150175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.