New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3150028	41 (0.840)	3 (0.060)	3/254	NT	7.1%	coding (132/1131 nt)	PP_2766	long‑chain‑fatty acid‑‑CoA ligase‑like protein
	?	NC_002947	= 3150060	39 (0.820)					coding (164/1131 nt)	PP_2766	long‑chain‑fatty acid‑‑CoA ligase‑like protein

AACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGCCCGACGCGGAGCAACTGACGCT  >  NC_002947/3149915‑3150204                                                                                                                                                  |                                                                                                                                                 aacaacCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAggc                                                                                                                                               >  1:70178‑M2/1‑146 (MQ=255)    aacCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCgg                                                                                                                                            <  4:211757/149‑1 (MQ=255)    aacCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCgg                                                                                                                                            <  8:192394/149‑1 (MQ=255)      ccTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCt                                                                                                                                          >  2:29449/1‑149 (MQ=255)           cGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTcgcg                                                                                                                                     >  6:110996/1‑149 (MQ=255)               cAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccg                                                                                                                                 <  5:286655/149‑1 (MQ=255)               cAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccg                                                                                                                                 >  1:233427/1‑149 (MQ=255)               cAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccg                                                                                                                                 >  2:284851/1‑149 (MQ=255)                aGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccgg                                                                                                                                <  4:255648/149‑1 (MQ=255)                aGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGcggccgg                                                                                                                                <  3:196091/149‑1 (MQ=255)                    tGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGa                                                                                                                             >  8:267904/1‑148 (MQ=255)                         gCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGcc                                                                                                                        <  5:132993/148‑1 (MQ=255)                         gCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCct                                                                                                                       >  6:210843/1‑149 (MQ=255)                         gCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCct                                                                                                                       >  2:90866/1‑149 (MQ=255)                          cccGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCctg                                                                                                                      <  5:110996/149‑1 (MQ=255)                           ccGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCctgc                                                                                                                     >  1:303664/1‑149 (MQ=255)                                   aTCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCctg                                                                                                                      >  1:158909/1‑140 (MQ=255)                                   aTCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCctg                                                                                                                      <  2:158909/140‑1 (MQ=255)                                             ggCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCCGCGACAGCCTGCTGATCGTCAGCCGGCcgc                                                                                                   <  1:24973/149‑1 (MQ=255)                                               cGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCgcgc                                                                                                 >  6:166555/1‑149 (MQ=255)                                                       gcgttgcgCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAgg                                                                                          <  2:233427/148‑1 (MQ=255)                                                             cgcCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCgctgct                                                                                   <  7:267904/149‑1 (MQ=255)                                                                cacaAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTgg                                                                                 >  7:132392/1‑148 (MQ=255)                                                                 acaAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCg                                                                                                                              <  2:248474/102‑1 (MQ=255)                                                                 acaAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGc                                                                                >  6:244371/1‑148 (MQ=255)                                                                   aaGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCgg                                                                                                                                            >  3:53124/1‑86 (MQ=255)                                                                   aaGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCgg                                                                                                                                            <  4:53124/86‑1 (MQ=255)                                                                   aaGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAg                                                                             <  5:166555/149‑1 (MQ=255)                                                                            ggCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTggcggc                                                                    >  6:151239/1‑149 (MQ=255)                                                                               cTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCa                                                                 <  5:210843/149‑1 (MQ=255)                                                                                  tgGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCGGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGt                                                               <  5:244371/148‑1 (MQ=255)                                                                                     cAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCt                                                           <  2:303664/149‑1 (MQ=255)                                                                                         cgcgcAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGggc                                                       <  1:284851/149‑1 (MQ=255)                                                                                                cTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCt                                                                                              <  4:176867/103‑1 (MQ=255)                                                                                                cTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCt                                                                                              >  3:176867/1‑103 (MQ=255)                                                                                                                gCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAggccagcagttgcgcccagctgcgcgcctgccacaggcctagacgcttgtggcgcaacgcaacgtccgccccacgttgat                                                                  <  4:6554‑M2/115‑81 (MQ=255)                                                                                                                gCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAggccagcagttgcgcccagctgcgcgcctgccacaggcctagacgcttgtggcgcaacgcaacgtccgccccacgttgat                                                                  >  3:6554‑M2/1‑35 (MQ=255)                                                                                                                 ccGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAggccagcagttgcgcccagctgcgcgcctgccacaggcctagacgcttgtggcgcaacgcaacgtccgccccacgttgatgtgcccgggccagcaagctggccggcaggttgttc                               <  3:201322‑M2/149‑116 (MQ=255)                                                                                                                        gCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGc                        >  6:11078/1‑149 (MQ=255)                                                                                                                        gCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGc                        >  7:122445/1‑149 (MQ=255)                                                                                                                          agagCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGccc                      >  5:232025/1‑149 (MQ=255)                                                                                                                           gagCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGa                                   >  1:192254/1‑135 (MQ=255)                                                                                                                           gagCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGa                                   <  2:192254/135‑1 (MQ=255)                                                                                                                                  gCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGCCCGACGCgg               <  8:132392/148‑1 (MQ=255)                                                                                                                                     aCCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGCCCGACGCGGa              >  2:7719/1‑146 (MQ=255)                                                                                                                                     aCCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGCCCGACGCGGa              <  1:7719/146‑1 (MQ=255)                                                                                                                                     aCCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGCCCGACGCGGAGc            >  1:15709/1‑148 (MQ=255)                                                                                                                                      ccGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGCCCGACGCGGAGCaa          >  1:30599/1‑149 (MQ=255)                                                                                                                                              cgcgAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGCCCGACGCGGAGCAACTGACGCt  <  1:90866/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                 AACAACCTGCCGGCCAGCTTGCTGGCCCGGGCACATCAACGTGGGGCGGACGTTGCGTTGCGCCACAAGCGTCTAGGCCTGTGGCAGGCGCGCAGCTGGGCGCAACTGCTGGCCGAGGTGCAGAGCCTGGCCACCGGGCTGCGCGAGGCCGGCTTCGCGGCCGGCGACAGCCTGCTGATCGTCAGCCGGCCGCGCCCTGAGGCGCTGCTGGCAAGCCTGGCGGCGCAGTGGCTGGGCGGCGTCGCGGCACTGCTCGATCCGCTGATGCCCGACGCGGAGCAACTGACGCT  >  NC_002947/3149915‑3150204

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.