New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3323930 | 45 (0.920) | 4 (0.090) | 3/250 | NT | 9.0% | coding (1204/1251 nt) | PP_2924 | hypothetical protein |
? | NC_002947 | = 3323977 | 38 (0.810) | coding (1157/1251 nt) | PP_2924 | hypothetical protein |
CGACCAGGTGACTTCCGACGGGTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGAC > NC_002947/3323788‑3324076 | cGACCAGGTGACTTCCGACGGGTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTc < 4:155664/148‑1 (MQ=255) gACCAGGTGACTTCCGACGGGTCGATGCCATGGCTCAACAAACCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGACGCAGTCGAGTGCGATCACCCCAAGAACCCCATCTGCACGGGCGATGGCGGCTCACTCAAGCGCGCTCg > 5:26339/1‑148 (MQ=255) gACGGGTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTgcg > 5:266869/1‑148 (MQ=255) ggTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCt > 8:223214/1‑149 (MQ=255) gATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCgg < 2:45942/148‑1 (MQ=255) gATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGc < 4:155898/149‑1 (MQ=255) gATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATC‑CCCCCATACCCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCCAGCCGCTGCGCAGCTCGGcc > 5:35808/1‑149 (MQ=255) tGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCt < 7:223214/149‑1 (MQ=255) cATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTggg > 3:109168/1‑149 (MQ=255) tCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAAGCAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGt > 1:53508/1‑149 (MQ=255) tCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCGATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTc > 4:225401/1‑149 (MQ=255) aacaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg > 4:95090/1‑149 (MQ=255) aacaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg > 5:100781/1‑149 (MQ=255) aacaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg < 4:109168/149‑1 (MQ=255) aacaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCg < 3:3750/148‑1 (MQ=255) acaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg > 2:200646/1‑148 (MQ=255) ccccGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcg > 4:153388‑M1/1‑100 (MQ=255) cccGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgc < 2:67145‑M2/149‑4 (MQ=255) cacGGGCCTGCTCGAGCCACCTGGCGAA‑CAGGTCGTAGCAGACTAGTGCGATCACCCCCATAAACCCAACTCCACGGGCGCAGGCGGAACACTCAACCGCGCTCGCCGCAAGCCGCAGCCCAGCTCGGCCAGGGCGCGTCGGTAGTCGc > 8:275441/3‑149 (MQ=255) ccGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcgct > 7:53429‑M1/1‑98 (MQ=255) ccTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCTATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTaa < 3:225401/149‑1 (MQ=255) ccTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcgcttgagt < 8:53429‑M1/149‑57 (MQ=255) ccTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcgcttgagt < 3:153388‑M1/149‑57 (MQ=255) ccTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTaa < 3:129300/149‑1 (MQ=255) cTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGa < 6:266869/148‑1 (MQ=255) gcgcCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGaa < 6:16445/149‑1 (MQ=255) ccAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg < 6:109945/126‑1 (MQ=255) ccAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg > 5:109945/1‑126 (MQ=255) gCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGcc < 6:100781/149‑1 (MQ=255) aa‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑Tg < 7:275441/149‑1 (MQ=255) gtcgtcGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAg > 6:115573/1‑149 (MQ=255) gtcgtcGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAg < 2:53508/149‑1 (MQ=255) gtcgCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCAc > 1:100662/1‑149 (MQ=255) gCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCAcgca < 1:200646/149‑1 (MQ=255) aGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCAcgcagc > 1:201812/1‑149 (MQ=255) gAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCAcgcagcgcag > 1:137418/1‑149 (MQ=255) tGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCt < 2:137418/148‑1 (MQ=255) ccccATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGgtc < 3:95090/149‑1 (MQ=255) cccATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCATCACgcagcgcagc < 8:90983/137‑1 (MQ=255) cccATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACgcagcgcagc > 7:90983/1‑137 (MQ=255) ccATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATc < 2:9955/134‑1 (MQ=255) ccATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATc > 1:9955/1‑134 (MQ=255) gCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATgcgc > 1:139258/1‑149 (MQ=255) cACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTCTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATgcgc < 1:67145/149‑1 (MQ=255) gcgcTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTTTAACGATGAACGGCCGTGCCT‑TGTACAGCACGCAGCGCAGCTGGATCAGGTCGTCATATCGGATGCGCGGCTcc < 6:26339/149‑1 (MQ=255) tGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGTGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGgc > 3:145039/1‑149 (MQ=255) tGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGgc > 5:182365/1‑149 (MQ=255) agcactcaAGCGCGCTCGCAGCAAGCCGCGGCGCCGCGCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAggg < 6:35808/147‑1 (MQ=255) actcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcagg < 8:53429‑M2/149‑94 (MQ=255) actcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcagg < 3:153388‑M2/149‑94 (MQ=255) ctcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAg < 7:238924/110‑1 (MQ=255) ctcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAg > 8:238924/1‑110 (MQ=255) tcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGAc > 1:29214/1‑148 (MQ=255) aaGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGAcc < 2:201812/147‑1 (MQ=255) aGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcaggcccgg > 7:53429‑M2/1‑51 (MQ=255) aGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGa < 5:115573/149‑1 (MQ=255) gCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcaggcccggg < 2:67145‑M1/149‑147 (MQ=255) cgcgcTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcaggcccgggg > 4:153388‑M2/1‑49 (MQ=255) | CGACCAGGTGACTTCCGACGGGTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAA‑CAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGAC > NC_002947/3323788‑3324076 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |