New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 332393045 (0.920)4 (0.090) 3/250 NT 9.0% coding (1204/1251 nt) PP_2924 hypothetical protein
?NC_002947 = 3323977 38 (0.810)coding (1157/1251 nt) PP_2924 hypothetical protein

CGACCAGGTGACTTCCGACGGGTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGAC  >  NC_002947/3323788‑3324076
                                                                                                                                               |                                                                                                                                                   
cGACCAGGTGACTTCCGACGGGTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTc                                                                                                                                                <  4:155664/148‑1 (MQ=255)
 gACCAGGTGACTTCCGACGGGTCGATGCCATGGCTCAACAAACCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGACGCAGTCGAGTGCGATCACCCCAAGAACCCCATCTGCACGGGCGATGGCGGCTCACTCAAGCGCGCTCg                                                                                                                                               >  5:26339/1‑148 (MQ=255)
                gACGGGTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTgcg                                                                                                                                >  5:266869/1‑148 (MQ=255)
                    ggTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCt                                                                                                                           >  8:223214/1‑149 (MQ=255)
                        gATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCgg                                                                                                                        <  2:45942/148‑1 (MQ=255)
                        gATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGc                                                                                                                       <  4:155898/149‑1 (MQ=255)
                        gATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCCCCCCATACCCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCCAGCCGCTGCGCAGCTCGGcc                                                                                                                      >  5:35808/1‑149 (MQ=255)
                          tGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCt                                                                                                                     <  7:223214/149‑1 (MQ=255)
                             cATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTggg                                                                                                                  >  3:109168/1‑149 (MQ=255)
                                   tCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAAGCAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGt                                                                                                             >  1:53508/1‑149 (MQ=255)
                                   tCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCGATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTc                                                                                                            >  4:225401/1‑149 (MQ=255)
                                     aacaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg                                                                                                          >  4:95090/1‑149 (MQ=255)
                                     aacaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg                                                                                                          >  5:100781/1‑149 (MQ=255)
                                     aacaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg                                                                                                          <  4:109168/149‑1 (MQ=255)
                                     aacaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCg                                                                                                           <  3:3750/148‑1 (MQ=255)
                                      acaacCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg                                                                                                          >  2:200646/1‑148 (MQ=255)
                                           ccccGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcg                                                                                                    >  4:153388‑M1/1‑100 (MQ=255)
                                            cccGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgc                                                                                                   <  2:67145‑M2/149‑4 (MQ=255)
                                            cacGGGCCTGCTCGAGCCACCTGGCGAACAGGTCGTAGCAGACTAGTGCGATCACCCCCATAAACCCAACTCCACGGGCGCAGGCGGAACACTCAACCGCGCTCGCCGCAAGCCGCAGCCCAGCTCGGCCAGGGCGCGTCGGTAGTCGc                                                                                                   >  8:275441/3‑149 (MQ=255)
                                             ccGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcgct                                                                                                  >  7:53429‑M1/1‑98 (MQ=255)
                                                  ccTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCTATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTaa                                                                                             <  3:225401/149‑1 (MQ=255)
                                                  ccTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcgcttgagt                                                                                             <  8:53429‑M1/149‑57 (MQ=255)
                                                  ccTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcgcttgagt                                                                                             <  3:153388‑M1/149‑57 (MQ=255)
                                                  ccTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTaa                                                                                             <  3:129300/149‑1 (MQ=255)
                                                      cTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGa                                                                                          <  6:266869/148‑1 (MQ=255)
                                                         gcgcCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGaa                                                                                      <  6:16445/149‑1 (MQ=255)
                                                            ccAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg                                                                                                          <  6:109945/126‑1 (MQ=255)
                                                            ccAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCgg                                                                                                          >  5:109945/1‑126 (MQ=255)
                                                                   gCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGcc                                                                            <  6:100781/149‑1 (MQ=255)
                                                                      aaCAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTg                                                                        <  7:275441/149‑1 (MQ=255)
                                                                            gtcgtcGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAg                                                                   >  6:115573/1‑149 (MQ=255)
                                                                            gtcgtcGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAg                                                                   <  2:53508/149‑1 (MQ=255)
                                                                               gtcgCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCAc                                                                >  1:100662/1‑149 (MQ=255)
                                                                                  gCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCAcgca                                                             <  1:200646/149‑1 (MQ=255)
                                                                                    aGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCAcgcagc                                                           >  1:201812/1‑149 (MQ=255)
                                                                                        gAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCAcgcagcgcag                                                       >  1:137418/1‑149 (MQ=255)
                                                                                           tGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCt                                                     <  2:137418/148‑1 (MQ=255)
                                                                                                    ccccATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGgtc                                           <  3:95090/149‑1 (MQ=255)
                                                                                                     cccATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCATCACgcagcgcagc                                                      <  8:90983/137‑1 (MQ=255)
                                                                                                     cccATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACgcagcgcagc                                                      >  7:90983/1‑137 (MQ=255)
                                                                                                              ccATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATc                                                <  2:9955/134‑1 (MQ=255)
                                                                                                              ccATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATc                                                >  1:9955/1‑134 (MQ=255)
                                                                                                                    gCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATgcgc                           >  1:139258/1‑149 (MQ=255)
                                                                                                                     cACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTCTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATgcgc                           <  1:67145/149‑1 (MQ=255)
                                                                                                                          gcgcTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTTTAACGATGAACGGCCGTGCCTTGTACAGCACGCAGCGCAGCTGGATCAGGTCGTCATATCGGATGCGCGGCTcc                     <  6:26339/149‑1 (MQ=255)
                                                                                                                              tGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGTGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGgc                 >  3:145039/1‑149 (MQ=255)
                                                                                                                              tGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGgc                 >  5:182365/1‑149 (MQ=255)
                                                                                                                                    agcactcaAGCGCGCTCGCAGCAAGCCGCGGCGCCGCGCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAggg           <  6:35808/147‑1 (MQ=255)
                                                                                                                                       actcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcagg         <  8:53429‑M2/149‑94 (MQ=255)
                                                                                                                                       actcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcagg         <  3:153388‑M2/149‑94 (MQ=255)
                                                                                                                                        ctcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAg                                              <  7:238924/110‑1 (MQ=255)
                                                                                                                                        ctcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAg                                              >  8:238924/1‑110 (MQ=255)
                                                                                                                                         tcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGAc       >  1:29214/1‑148 (MQ=255)
                                                                                                                                           aaGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGAcc      <  2:201812/147‑1 (MQ=255)
                                                                                                                                            aGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcaggcccgg    >  7:53429‑M2/1‑51 (MQ=255)
                                                                                                                                            aGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGa   <  5:115573/149‑1 (MQ=255)
                                                                                                                                             gCGactaccgacccgcccaggccgagctgcgcagcggcttgctgcgagcgcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcaggcccggg   <  2:67145‑M1/149‑147 (MQ=255)
                                                                                                                                              cgcgcTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcaggcccgggg  >  4:153388‑M2/1‑49 (MQ=255)
                                                                                                                                               |                                                                                                                                                   
CGACCAGGTGACTTCCGACGGGTCGATGCCATGGCTCAACAACCCCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGAC  >  NC_002947/3323788‑3324076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.