New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3323930	45 (0.920)	4 (0.090)	3/250	NT	9.0%	coding (1204/1251 nt)	PP_2924	hypothetical protein
	?	NC_002947	= 3323977	38 (0.810)					coding (1157/1251 nt)	PP_2924	hypothetical protein

CCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTACGCTGCGCAGGCCGATGCCGGGGATACGCGCCA  >  NC_002947/3323832‑3324115                                                                                                                                                  |                                                                                                                                            cccGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgc                                                                                                                                          <  2:67145‑M2/149‑4 (MQ=255) cacGGGCCTGCTCGAGCCACCTGGCGAACAGGTCGTAGCAGACTAGTGCGATCACCCCCATAAACCCAACTCCACGGGCGCAGGCGGAACACTCAACCGCGCTCGCCGCAAGCCGCAGCCCAGCTCGGCCAGGGCGCGTCGGTAGTCGc                                                                                                                                          >  8:275441/3‑149 (MQ=255)       ccTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCTATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTaa                                                                                                                                    <  3:225401/149‑1 (MQ=255)       ccTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTaa                                                                                                                                    <  3:129300/149‑1 (MQ=255)           cTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGa                                                                                                                                 <  6:266869/148‑1 (MQ=255)              gcgcCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGaa                                                                                                                             <  6:16445/149‑1 (MQ=255)                        gCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGcc                                                                                                                   <  6:100781/149‑1 (MQ=255)                           aaCAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑Tg                                                                                                               <  7:275441/149‑1 (MQ=255)                                gtcgtcGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAg                                                                                                          >  6:115573/1‑149 (MQ=255)                                gtcgtcGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAg                                                                                                          <  2:53508/149‑1 (MQ=255)                                   gtcgCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCAc                                                                                                       >  1:100662/1‑149 (MQ=255)                                      gCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCAcgca                                                                                                    <  1:200646/149‑1 (MQ=255)                                        aGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCAcgcagc                                                                                                  >  1:201812/1‑149 (MQ=255)                                            gAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCAcgcagcgcag                                                                                              >  1:137418/1‑149 (MQ=255)                                               tGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCt                                                                                            <  2:137418/148‑1 (MQ=255)                                                        ccccATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGgtc                                                                                  <  3:95090/149‑1 (MQ=255)                                                         cccATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCATCACgcagcgcagc                                                                                             <  8:90983/137‑1 (MQ=255)                                                         cccATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACgcagcgcagc                                                                                             >  7:90983/1‑137 (MQ=255)                                                                  ccATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATc                                                                                       <  2:9955/134‑1 (MQ=255)                                                                  ccATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATc                                                                                       >  1:9955/1‑134 (MQ=255)                                                                        gCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATgcgc                                                                  >  1:139258/1‑149 (MQ=255)                                                                         cACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCTCTGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATgcgc                                                                  <  1:67145/149‑1 (MQ=255)                                                                              gcgcTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTTTAACGATGAACGGCCGTGCCT‑TGTACAGCACGCAGCGCAGCTGGATCAGGTCGTCATATCGGATGCGCGGCTcc                                                            <  6:26339/149‑1 (MQ=255)                                                                                  tGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGTGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGgc                                                        >  3:145039/1‑149 (MQ=255)                                                                                  tGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGgc                                                        >  5:182365/1‑149 (MQ=255)                                                                                        agcactcaAGCGCGCTCGCAGCAAGCCGCGGCGCCGCGCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAggg                                                  <  6:35808/147‑1 (MQ=255)                                                                                           actcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcagg                                                <  8:53429‑M2/149‑94 (MQ=255)                                                                                           actcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcagg                                                <  3:153388‑M2/149‑94 (MQ=255)                                                                                            ctcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAg                                                                                     <  7:238924/110‑1 (MQ=255)                                                                                            ctcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAg                                                                                     >  8:238924/1‑110 (MQ=255)                                                                                             tcaAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGAc                                              >  1:29214/1‑148 (MQ=255)                                                                                               aaGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGAcc                                             <  2:201812/147‑1 (MQ=255)                                                                                                aGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcaggcccgg                                           >  7:53429‑M2/1‑51 (MQ=255)                                                                                                aGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGa                                          <  5:115573/149‑1 (MQ=255)                                                                                                  cgcgcTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTcgcttgagtgagccgccagcgcccgtgcagatggggttatgggggtgatcgcactcgactgcgacgacctgttcgccacctggcgcgagcaggcccgggg                                         >  4:153388‑M2/1‑49 (MQ=255)                                                                                                       tCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTa                                   >  3:302918/1‑149 (MQ=255)                                                                                                        cGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGgtcgtc                                                                               >  5:58130/1‑104 (MQ=255)                                                                                                        cGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGgtcgtc                                                                               <  6:58130/104‑1 (MQ=255)                                                                                                           agcaAGCCGCTGCGCAGCTCGGCCTGGGTGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTACGCt                               <  4:145039/149‑1 (MQ=255)                                                                                                                gCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTACGCTgcg                            >  2:108819/1‑147 (MQ=255)                                                                                                                   gCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTACGCTGCGCAGGc                       >  1:239125/1‑149 (MQ=255)                                                                                                                        gcAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTACGCTGCGCAGGCCGATg                  >  5:12792/1‑149 (MQ=255)                                                                                                                               ggCCTGGGCGTGTCGGTAGTCGATTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCTGGGCGACCAGACGCTGTACGCTGCGCAGGCCGATGCCgg              <  6:182365/146‑1 (MQ=255)                                                                                                                                  cTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTACGCTGCGCAGGCCGATGCCGGGGATAc        >  1:65519/1‑149 (MQ=255)                                                                                                                                      gCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTACGCTGCGCAGGCCGATGCCGGGGATACgcgc    <  1:108819/149‑1 (MQ=255)                                                                                                                                        gggTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTACGCTGCGCAGGCCGATGCCGGGGATACGCGCCa  <  2:246603/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                            CCCGGGCCTGCTCGCGCCAGGTGGCGAACAGGTCGTCGCAGTCGAGTGCGATCACCCCCATAACCCCATCTGCACGGGCGCTGGCGGCTCACTCAAGCGCGCTCGCAGCAAGCCGCTGCGCAGCTCGGCCTGGGCGGGTCGGTAGTCGCTTGTAACGATGAACGGCCGTGCCT‑TGTCCAGCACGCAGCGCAGCTGGATCAGGTCGTCATAACGGATGCGCCGCTCCCGGCGCAGGGCGACCAGACGCTGTACGCTGCGCAGGCCGATGCCGGGGATACGCGCCA  >  NC_002947/3323832‑3324115

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.