New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3642292	42 (0.860)	3 (0.070)	3/246	NT	6.9%	coding (913/1431 nt)	PP_3209	isoxanthopterin deaminase
	?	NC_002947	= 3642312	41 (0.890)					coding (893/1431 nt)	PP_3209	isoxanthopterin deaminase

GCCAGCCTTGGCCCTTTGCATTAGCCAGGCGGCGTGGGT‑TTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGC  >  NC_002947/3642149‑3642437                                                                                                                                                 |                                                                                                                                                   gCCAGCCTTGGCCCTTTGCATTAGCCAGGCGGCGTGGGT‑TTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGcc                                                                                                                                               >  8:31018/1‑149 (MQ=255)   cAGCCTTGGCCCTTTGCATTAGCCAGGCGGCGTGGGTGTTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCg                                                                                                                                              >  1:209766/1‑149 (MQ=255)   cAGCCTTGGCCCTTTGCATTAGCCAGGCGGCGTGGGT‑TTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCgg                                                                                                                                             <  2:209766/149‑1 (MQ=255)     gCCTTGGCCCTTTGCATTAGCCAGGCGGCGTGGGT‑TTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGc                                                                                                                                            >  2:171769/1‑148 (MQ=255)              cTTTGCATTAGCCAGGCGGCGTGGGT‑TTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTtg                                                                                                                                  <  4:272023/149‑1 (MQ=255)                     ttAGCCAGGCGGCGTGGGT‑TTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGggcag                                                                                                                           <  3:286246‑M2/149‑6 (MQ=255)                            ggcggcGTGGGT‑TTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCcacaaagcaatggccggcttggcagtggtatc                                                                                                                    <  6:287404‑M1/149‑33 (MQ=255)                                 cgTGGGT‑TTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGAtg‑ccg                                                                                                              <  1:23988/149‑1 (MQ=255)                                             cTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCcacaaagcaatggccggcttggcagtggtatcgca                                                                                                                 >  1:135905‑M1/1‑101 (MQ=255)                                             cTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCcacaaagcaatggccggcttggcagtggtatcgca                                                                                                                 <  2:135905‑M1/136‑36 (MQ=255)                                             cTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGgc                                                                                                   >  4:8089/1‑149 (MQ=255)                                              tGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGgcg                                                                                                  >  2:172776/1‑149 (MQ=255)                                                aTCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGgcgc                                                                                                 <  8:42764/148‑1 (MQ=255)                                                  cATGTCGCAGGCTGCGTTGGAGGCAGCGCCATCCACGCCGATCGAGCCCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCca                                                                                              <  8:117520/149‑1 (MQ=255)                                                       cGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCagcagc                                                                                         >  2:258267/1‑149 (MQ=255)                                                        gCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCt                                                                                        <  1:258267/149‑1 (MQ=255)                                                          aGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTgg                                                                                      <  3:8089/149‑1 (MQ=255)                                                            gCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGAt                                                                                    <  4:258428/149‑1 (MQ=255)                                                            gCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGAt                                                                                    >  4:109656/1‑149 (MQ=255)                                                              ttCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGAttt                                                                                  >  1:59853/1‑149 (MQ=255)                                                              ttCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGAtt                                                                                   >  7:49422/1‑148 (MQ=255)                                                                cGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATttc                                                                                 <  4:39446/148‑1 (MQ=255)                                                                        gCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTtg                                                                                                                                  >  3:180834/1‑92 (MQ=255)                                                                        gCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTtg                                                                                                                                  <  4:180834/92‑1 (MQ=255)                                                                           gcgcCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAg                                                                     >  8:291793/1‑149 (MQ=255)                                                                              ccATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCtt                                                                  <  2:59853/149‑1 (MQ=255)                                                                              ccATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCtt                                                                  <  5:281496/149‑1 (MQ=255)                                                                                      gCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGt                                                          >  7:8004/1‑149 (MQ=255)                                                                                             gagaCCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCAGTGCCGGTGGCGCCCAGCAGCTGGATTTCTACGGCGCTCAGCTTGACCAGGTGCGCGaa                                                   <  1:171769/149‑1 (MQ=255)                                                                                              agaCCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAAc                                                  <  8:49422/149‑1 (MQ=255)                                                                                                aCCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACca                                                <  3:109656/149‑1 (MQ=255)                                                                                                        gCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCCGGTGCCGGTGGCGCCCAGCAGCTGGa                                                                                     <  1:2959/105‑1 (MQ=255)                                                                                                        gCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGa                                                                                     >  2:2959/1‑104 (MQ=255)                                                                                                           tGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGAtg‑c                                                                                                                >  8:202443/1‑74 (MQ=255)                                                                                                           tGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGAtg‑c                                                                                                                <  7:202443/74‑1 (MQ=255)                                                                                                           tGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGcc                                     >  5:72271/1‑149 (MQ=255)                                                                                                              ggCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGa                                  <  4:286246/149‑1 (MQ=255)                                                                                                              ggCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGa                                  <  1:172776/149‑1 (MQ=255)                                                                                                               gCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAg                                 <  8:8004/149‑1 (MQ=255)                                                                                                                    cATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCAt                             <  7:291793/148‑1 (MQ=255)                                                                                                                        gCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTg                        <  6:72271/149‑1 (MQ=255)                                                                                                                        gCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTg                        <  7:31018/149‑1 (MQ=255)                                                                                                                          aaCGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGaa                                                   <  8:80104/120‑1 (MQ=255)                                                                                                                          aaCGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGaa                                                   >  7:80104/1‑120 (MQ=255)                                                                                                                            cGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTcc                    >  7:12625/1‑149 (MQ=255)                                                                                                                                   tGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGggcagtggtatcgcagatatcgttgccatggaggccgcaggcatgtcggtctcgatcggcgtggatggcgctgcctccaacgaagcctgcgacatgatcag                           <  2:135905‑M2/136‑102 (MQ=255)                                                                                                                                   tGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGggcagtggtatcgcagatatcgttgccatggaggccgcaggcatgtcggtctcgatcggcgtggatggcgctgcctccaacgaagcctgcgacatgatcag                           >  1:135905‑M2/1‑35 (MQ=255)                                                                                                                                    gCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGATCCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGaa            >  7:279803/1‑149 (MQ=255)                                                                                                                                      gATACCACTGCCAAGCCGGCCATTGCTTTGTGggcagtggtatcgcagatatcgttgccatggaggccgcaggcatgtcggtctcgatcggcgtggatggcgctgcctccaacgaagcctgcgacatgatcagcgaaacccacgccgcc           <  6:287404‑M2/149‑118 (MQ=255)                                                                                                                                       aTACAACTGCAAAGCCGGCAATTGCTTTGTGGGCAGTGGTCGATG‑CAGGTGAAGGTGGCGCCCAGCAGCTGGATTTATTAGGCGCTCAGCTTGACCATGTGCGCGAACCACAAGTACGGCCCGATACATTACTGCTACGCGCAGAacac         >  2:240272/1‑149 (MQ=255)                                                                                                                                             cTGCCcacaaagcaatggccggcttggcagtggtatcgcagatatcgttgccatggaggccgcaggcatgtcggtctcgatcggcgtggatggcgctgcctccaacgaagcctgcgacatgatcagcgaaacccacgccgcctggctaa    <  3:286246‑M1/149‑145 (MQ=255)                                                                                                                                              tGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGc  >  8:145847/1‑149 (MQ=255)                                                                                                                                                ccAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGc  >  1:296138/1‑147 (MQ=255)                                                                                                                                                 cAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGc  >  4:140469/1‑146 (MQ=255)                                                                                                                                                 |                                                                                                                                                   GCCAGCCTTGGCCCTTTGCATTAGCCAGGCGGCGTGGGT‑TTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGC  >  NC_002947/3642149‑3642437

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.