New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3642292	42 (0.860)	3 (0.070)	3/246	NT	6.9%	coding (913/1431 nt)	PP_3209	isoxanthopterin deaminase
	?	NC_002947	= 3642312	41 (0.890)					coding (893/1431 nt)	PP_3209	isoxanthopterin deaminase

TTAGCCAGGCGGCGTGGGTTTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGA  >  NC_002947/3642169‑3642459                                                                                                                                                |                                                                                                                                                     ttAGCCAGGCGGCGTGGGTTTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGggcag                                                                                                                                                 <  3:286246‑M2/149‑6 (MQ=255)             cgTGGGTTTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGAtg‑ccg                                                                                                                                    <  1:23988/149‑1 (MQ=255)                        cTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGgc                                                                                                                         >  4:8089/1‑149 (MQ=255)                         tGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGgcg                                                                                                                        >  2:172776/1‑149 (MQ=255)                           aTCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGgcgc                                                                                                                       <  8:42764/148‑1 (MQ=255)                             cATGTCGCAGGCTGCGTTGGAGGCAGCGCCATCCACGCCGATCGAGCCCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCca                                                                                                                    <  8:117520/149‑1 (MQ=255)                                  cGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCagcagc                                                                                                               >  2:258267/1‑149 (MQ=255)                                   gCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCt                                                                                                              <  1:258267/149‑1 (MQ=255)                                     aGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTgg                                                                                                            <  3:8089/149‑1 (MQ=255)                                       gCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGAt                                                                                                          <  4:258428/149‑1 (MQ=255)                                       gCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGAt                                                                                                          >  4:109656/1‑149 (MQ=255)                                         ttCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGAttt                                                                                                        >  1:59853/1‑149 (MQ=255)                                         ttCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGAtt                                                                                                         >  7:49422/1‑148 (MQ=255)                                           cGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATttc                                                                                                       <  4:39446/148‑1 (MQ=255)                                                      gcgcCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAg                                                                                           >  8:291793/1‑149 (MQ=255)                                                         ccATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCtt                                                                                        <  5:281496/149‑1 (MQ=255)                                                         ccATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCtt                                                                                        <  2:59853/149‑1 (MQ=255)                                                                 gCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGt                                                                                >  7:8004/1‑149 (MQ=255)                                                                        gagaCCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCAGTGCCGGTGGCGCCCAGCAGCTGGATTTCTACGGCGCTCAGCTTGACCAGGTGCGCGaa                                                                         <  1:171769/149‑1 (MQ=255)                                                                         agaCCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAAc                                                                        <  8:49422/149‑1 (MQ=255)                                                                           aCCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACca                                                                      <  3:109656/149‑1 (MQ=255)                                                                                   gCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATGCCCGGTGCCGGTGGCGCCCAGCAGCTGGa                                                                                                           <  1:2959/105‑1 (MQ=255)                                                                                   gCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGa                                                                                                           >  2:2959/1‑104 (MQ=255)                                                                                      tGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGAtg‑c                                                                                                                                      >  8:202443/1‑74 (MQ=255)                                                                                      tGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGAtg‑c                                                                                                                                      <  7:202443/74‑1 (MQ=255)                                                                                      tGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGcc                                                           >  5:72271/1‑149 (MQ=255)                                                                                         ggCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGa                                                        <  1:172776/149‑1 (MQ=255)                                                                                         ggCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGa                                                        <  4:286246/149‑1 (MQ=255)                                                                                          gCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAg                                                       <  8:8004/149‑1 (MQ=255)                                                                                               cATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCAt                                                   <  7:291793/148‑1 (MQ=255)                                                                                                   gCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTg                                              <  7:31018/149‑1 (MQ=255)                                                                                                   gCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTg                                              <  6:72271/149‑1 (MQ=255)                                                                                                     aaCGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGaa                                                                         <  8:80104/120‑1 (MQ=255)                                                                                                     aaCGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGaa                                                                         >  7:80104/1‑120 (MQ=255)                                                                                                       cGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTcc                                          >  7:12625/1‑149 (MQ=255)                                                                                                              tGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGggcagtggtatcgcagatatcgttgccatggaggccgcaggcatgtcggtctcgatcggcgtggatggcgctgcctccaacgaagcctgcgacatgatcag                                                 <  2:135905‑M2/136‑102 (MQ=255)                                                                                                              tGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGggcagtggtatcgcagatatcgttgccatggaggccgcaggcatgtcggtctcgatcggcgtggatggcgctgcctccaacgaagcctgcgacatgatcag                                                 >  1:135905‑M2/1‑35 (MQ=255)                                                                                                               gCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGATCCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGaa                                  >  7:279803/1‑149 (MQ=255)                                                                                                                 gATACCACTGCCAAGCCGGCCATTGCTTTGTGggcagtggtatcgcagatatcgttgccatggaggccgcaggcatgtcggtctcgatcggcgtggatggcgctgcctccaacgaagcctgcgacatgatcagcgaaacccacgccgcc                                 <  6:287404‑M2/149‑118 (MQ=255)                                                                                                                  aTACAACTGCAAAGCCGGCAATTGCTTTGTGGGCAGTGGTCGATG‑CAGGTGAAGGTGGCGCCCAGCAGCTGGATTTATTAGGCGCTCAGCTTGACCATGTGCGCGAACCACAAGTACGGCCCGATACATTACTGCTACGCGCAGAacac                               >  2:240272/1‑149 (MQ=255)                                                                                                                         tGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGc                        >  8:145847/1‑149 (MQ=255)                                                                                                                           ccAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGc                        >  1:296138/1‑147 (MQ=255)                                                                                                                            cAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGc                        >  4:140469/1‑146 (MQ=255)                                                                                                                             aaGCCGGCCATTGC‑TTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGagag                   <  2:205083/149‑1 (MQ=255)                                                                                                                                           tttGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGGCCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCa      >  1:226554/1‑149 (MQ=255)                                                                                                                                              gtgGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATg    <  3:140469/148‑1 (MQ=255)                                                                                                                                              gtgGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATg    >  3:51350/1‑148 (MQ=255)                                                                                                                                               tgGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGa  >  4:211488/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                     TTAGCCAGGCGGCGTGGGTTTCGCTGATCATGTCGCAGGCTTCGTTGGAGGCAGCGCCATCCACGCCGATCGAGACCGACATGCCTGCGGCCTCCATGGCAACGATATCTGCGATACCACTGCCAAGCCGGCCATTGCTTTGTGGGCAGTGGGCGATG‑CCGGTGCCGGTGGCGCCCAGCAGCTGGATTTCTTCGGCGCTCAGCTTGACCAGGTGCGCGAACCACACGTCCGGCCCGAGCCATTCCTGCTCCGCGCAGAACACCACGGGCGAGAGGCCGTGGCGATCATGGA  >  NC_002947/3642169‑3642459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.