New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4131117 | 45 (0.920) | 5 (0.110) | 4/250 | NT | 9.9% | intergenic (+29/+83) | PP_3634/PP_3635 | GNAT family acetyltransferase/sulfonate ABC transporter permease |
? | NC_002947 | = 4131165 | 48 (1.030) | intergenic (+77/+35) | PP_3634/PP_3635 | GNAT family acetyltransferase/sulfonate ABC transporter permease |
TTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGC > NC_002947/4130973‑4131264 | ttAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGcc > 7:54869/1‑148 (MQ=255) agcagGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCtcccacagg > 5:221403‑M1/1‑139 (MQ=255) tGAGGATGCAAAGAGCGACGCGCAGCAGATGCGCGAGGAGCGGCGGGATGAGCTGACCGCTCAAGCCCAGGAATGTGGGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGt < 4:76968/149‑1 (MQ=255) aTGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATCTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGc > 6:181691/1‑149 (MQ=255) tGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAgg < 8:71065/149‑1 (MQ=255) tCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCg < 7:280989/149‑1 (MQ=255) gAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGAGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGt > 7:13738/1‑149 (MQ=255) aaGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGt > 6:118610/1‑148 (MQ=255) gAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATAcc < 4:5901/125‑1 (MQ=255) gAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATAcc > 3:5901/1‑125 (MQ=255) tGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTgg < 8:54869/149‑1 (MQ=255) cgATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCtcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgc < 6:221403‑M1/149‑51 (MQ=255) gATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAgcg > 1:64506‑M2/1‑146 (MQ=255) tGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGGGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAgcgg > 5:181691‑M2/1‑144 (MQ=255) aGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAgcgggc > 5:224145‑M2/1‑142 (MQ=255) cGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTgg < 4:281165/138‑1 (MQ=255) cGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTgg > 3:281165/1‑138 (MQ=255) gtaTGAGATGACCGCTCAAGCCCAGTATTGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTTTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCcgc < 2:285855/147‑1 (MQ=255) gATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTCGCCCGCtcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgcgggcaagcccg < 2:14624‑M1/147‑62 (MQ=255) aTGAGCTGACCGCTCAAGCCGAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCGCAAGGCCGGTGATCTACCTGTGGGAGCGGGCGAGcgcgcg > 2:194472/1‑148 (MQ=255) aGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCt > 2:47676/1‑124 (MQ=255) aGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCt < 1:47676/124‑1 (MQ=255) gcggtcagCTCAAGCCCAGGAAGGTGGGCGCCAGCGCAAGAACGTGCATTGATCC‑GAGGGCCTGTGCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCgaagaa < 5:108853/142‑1 (MQ=255) aCCGCTCACGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTgg < 1:121570/123‑1 (MQ=255) aCCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGccc > 1:276308/1‑149 (MQ=255) gCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCcgcg < 3:255967/137‑1 (MQ=255) gCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCcgcg > 4:255967/1‑137 (MQ=255) tCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCCGGATGGCCTGTTCGCGGGCTTGCCCGCtcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgcgg > 1:67247‑M1/1‑73 (MQ=255) tCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCtcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgcgg < 2:67247‑M1/124‑53 (MQ=255) tCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTAGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCAGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTg > 8:65285/1‑149 (MQ=255) cAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTgg < 3:48797/117‑1 (MQ=255) cAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTgg > 4:48797/1‑117 (MQ=255) aaGCCCAGTAATGTGAGCGCCAGCGAAAGAACGTGCATTGATCC‑GTTGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGc < 8:13738/149‑1 (MQ=255) aGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGcc > 2:129020/1‑149 (MQ=255) gtgtgCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATg > 6:217871/1‑149 (MQ=255) gtgtgCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATg > 5:253118/1‑149 (MQ=255) tgtgCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATg > 3:61386/1‑148 (MQ=255) gcgcCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCa < 1:113950/143‑1 (MQ=255) gcgcCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCa > 2:113950/1‑143 (MQ=255) cAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAgc > 4:282925/1‑149 (MQ=255) aaGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGAt > 4:159154/1‑149 (MQ=255) aGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATg < 3:159154/149‑1 (MQ=255) accGTGCTTTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGTAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATg < 2:258873/130‑1 (MQ=255) aaCGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATg > 1:258873/1‑132 (MQ=255) ttGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCAcgc > 2:69674/1‑149 (MQ=255) aTCC‑GATTGCCTGTTCGCGGACTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCAcc < 8:208711/125‑1 (MQ=255) aTCC‑GATGGCCTGTTCGCGGACTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCAcc > 7:208711/1‑125 (MQ=255) gATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCagag > 7:78613/1‑149 (MQ=255) cTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCa > 7:44417/1‑149 (MQ=255) cgGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAgcgggcgagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcggtcagctcatc < 2:14624‑M2/147‑87 (MQ=255) cgGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATcc < 3:181442/141‑1 (MQ=255) cgGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATcc > 4:181442/1‑141 (MQ=255) cTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAAcccc < 5:118610/149‑1 (MQ=255) ttGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAAccc > 6:46903/1‑147 (MQ=255) gCCCGCtcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgcgggcaagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcggtcagctcatccagccgct > 5:224145‑M1/1‑6 (MQ=255) gCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAg < 8:11223/148‑1 (MQ=255) ccGCtcccacaggtacatcaccggccttgggccttacggtattcctgtgggcccgggcaagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcggtcagctcatccagccgctca > 5:181691‑M1/1‑4 (MQ=255) ccGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAgcgggcaagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttga < 2:67247‑M2/124‑73 (MQ=255) ccGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAgcgggcaagcccgcgaacaggccatccggatcaatgcacgttcttgcgctggcgcacacattcctgggcttga > 1:67247‑M2/1‑52 (MQ=255) ccGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCAc > 1:220757/1‑149 (MQ=255) cGCtcccacaggtacatcaccggccttgggccttacggtattcctgtgggcgcgggcaagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcggtcagctcatccagccgctcatc > 1:64506‑M1/1‑3 (MQ=255) gcgcCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAgcgggcaagcccgcgaacaggccatcggatcaatgcacgttcttgcgctggcgcacacattcctgggcttgagcggtcagctcatccagccgctcatcg < 6:221403‑M2/149‑100 (MQ=255) | TTAACCAGCAGGGTGAGGATGCAATGATCGAAGCGGAGCAGATGCGCGATGAGCGGCTGGATGAGCTGACCGCTCAAGCCCAGGAATGTGTGCGCCAGCGCAAGAACGTGCATTGATCC‑GATGGCCTGTTCGCGGGCTTGCCCGCGCCCACAGGAATACCGTAAGGCCCAAGGCCGGTGATGTACCTGTGGGAGCGGGCGAGCCCGCGAAGAAGCCCCATTGGCCTTTCAGCCATGCACCCAGCGCCGATGCAGCCCACGCGCCAGAGCATCCAGCACAAACCCCAGCACGC > NC_002947/4130973‑4131264 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |