New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 428471532 (0.650)3 (0.070) 3/244 NT 8.2% coding (120/849 nt) hbd 3‑hydroxybutyryl‑CoA dehydrogenase
?NC_002947 = 4284742 37 (0.810)coding (147/849 nt) hbd 3‑hydroxybutyryl‑CoA dehydrogenase

GAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCTGCACAGCTGGTGATCGAGGCGG  >  NC_002947/4284571‑4284863
                                                                                                                                                |                                                                                                                                                    
gAGCGCGTCTGAGGGAGGCTGACACATGCGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGcgcg                                                                                                                                                  <  5:183794/149‑1 (MQ=255)
 aGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGCGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCgg                                                                                                                                                 <  1:204235/149‑1 (MQ=255)
  gcgcGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGgt                                                                                                                                                <  8:248200/149‑1 (MQ=255)
  gcgcGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGgt                                                                                                                                                >  2:219906/1‑149 (MQ=255)
     cgTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGtgtg                                                                                                                                             <  5:8718/149‑1 (MQ=255)
         tGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCa                                                                                                                                         >  6:204857/1‑149 (MQ=255)
         tGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCa                                                                                                                                         >  8:230598/1‑149 (MQ=255)
           agggaggCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCAc                                                                                                                                        <  6:26446/148‑1 (MQ=255)
                   tGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGa                                                                                                                                   >  7:235140/1‑145 (MQ=255)
                   tGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGa                                                                                                                                   <  8:235140/145‑1 (MQ=255)
                   tGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGc                                                                                                                                 >  5:238475/1‑147 (MQ=255)
                     acacATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCaa                                                                                                                               <  5:71978/147‑1 (MQ=255)
                           gAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACctc                                                                                                                        <  8:34000‑M2/148‑4 (MQ=255)
                            aGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACctcga                                                                                                                      >  7:34000‑M2/1‑144 (MQ=255)
                            aGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACctcga                                                                                                                      >  8:15217‑M2/1‑144 (MQ=255)
                             gCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACctcgag                                                                                                                     >  7:230598‑M2/1‑143 (MQ=255)
                             gCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACctcgag                                                                                                                     >  5:204857‑M2/1‑143 (MQ=255)
                                ttGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACctcgagcgc                                                                                                                  <  6:30242‑M2/149‑10 (MQ=255)
                                   aaaaGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGgttcttgctcaaggtggccacaccgcgctcgagcgctg                                                                                                                <  3:299766‑M1/148‑39 (MQ=255)
                                         tCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGc                                                                                                         <  6:32240/149‑1 (MQ=255)
                                            ccGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGgttcttgctcaaggtggccacaccgcgctcgagcgc                                                                                                                  >  3:245663‑M1/1‑101 (MQ=255)
                                            ccGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGgttcttgctcaaggtggccacaccgcgctcgagcgc                                                                                                                  <  4:245663‑M1/137‑37 (MQ=255)
                                                     gcgcGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACtctc                                                                                             <  6:308580/149‑1 (MQ=255)
                                                                     cAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGcc                                                                              >  8:121892/1‑148 (MQ=255)
                                                                     cAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGcc                                                                              <  7:121892/148‑1 (MQ=255)
                                                                       aCGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCa                                                                           <  7:87039/149‑1 (MQ=255)
                                                                          gCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAgcc                                                                        <  3:271206/149‑1 (MQ=255)
                                                                             ttGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAgccgcc                                                                     <  1:219906/149‑1 (MQ=255)
                                                                             ttGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAgccgc                                                                      >  5:259525/1‑148 (MQ=255)
                                                                                cccAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCaaa                                                                  >  5:212212/1‑149 (MQ=255)
                                                                                               ttGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTAcc                                                   <  7:89991/149‑1 (MQ=255)
                                                                                                  ccGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAg                                                 >  6:12765/1‑148 (MQ=255)
                                                                                                       tACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACAGa                                           >  1:203233/1‑149 (MQ=255)
                                                                                                             gTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTacac                                     >  5:280110/1‑149 (MQ=255)
                                                                                                                   ctgGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCt                               >  7:141592/1‑149 (MQ=255)
                                                                                                                      gtggATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCg                                                             >  3:128211/1‑116 (MQ=255)
                                                                                                                      gtggATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCg                                                             <  4:128211/116‑1 (MQ=255)
                                                                                                                               tCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGc                                >  8:225383/1‑136 (MQ=255)
                                                                                                                               tCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGc                                <  7:225383/136‑1 (MQ=255)
                                                                                                                                ccGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCTGCACAg                  >  2:266200/1‑149 (MQ=255)
                                                                                                                                ccGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCTGCACAg                  >  2:111224/1‑149 (MQ=255)
                                                                                                                                     gCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCTGCACAGCTGGt             <  6:259525/149‑1 (MQ=255)
                                                                                                                                      cAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACctcgagcgctgcgtcggaaacatccaccagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcgatctttt             <  3:299766‑M2/148‑111 (MQ=255)
                                                                                                                                      cAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCTGCACAGCTGGTg            <  6:212212/149‑1 (MQ=255)
                                                                                                                                        gcgcTCGAGgttcttgctcaaggtggccacaccgcgctcgagcgctgcgtcggaaacatccaccagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcgatcttttcaa          <  6:30242‑M1/149‑141 (MQ=255)
                                                                                                                                        gcgcTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACctcgagcgctgcgtcggaaacatccaccagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacgg                      <  4:245663‑M2/137‑102 (MQ=255)
                                                                                                                                        gcgcTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACctcgagcgctgcgtcggaaacatccaccagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacgg                      >  3:245663‑M2/1‑36 (MQ=255)
                                                                                                                                           cTCGAGgttcttgctcaaggtggccacaccgcgctcgagcgctgcgtcggaaacatccaccagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcgatcttttcaatgc       >  7:230598‑M1/1‑6 (MQ=255)
                                                                                                                                           cTCGAGgttcttgctcaaggtggccacaccgcgctcgagcgctgcgtcggaaacatccaccagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcgatcttttcaatgc       >  5:204857‑M1/1‑6 (MQ=255)
                                                                                                                                            tCGAGgttcttgctcaaggtggccacaccgcgctcgagcgctgcgtcggaaacatccaccagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcgatcttttcaatgct      >  7:34000‑M1/1‑5 (MQ=255)
                                                                                                                                            tCGAGgttcttgctcaaggtggccacaccgcgctcgagcgctgcgtcggaaacatccaccagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcgatcttttcaatgct      >  8:15217‑M1/1‑5 (MQ=255)
                                                                                                                                              gAGgttcttgctcaaggtggccacaccgcgctcgagcgctgcgtcggaaacatccaccagcagcacctggtagccggcaatggcgcacacctgggcaatgccgttgcccatggtgcccgcgccgatcacggcgatcttttcaatgctc     <  8:34000‑M1/148‑146 (MQ=255)
                                                                                                                                              gAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCt                        >  6:173778/1‑129 (MQ=255)
                                                                                                                                              gAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCt                        <  5:173778/129‑1 (MQ=255)
                                                                                                                                              gAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCTGCACAGCTGGTGATCGAggc    <  6:238475/149‑1 (MQ=255)
                                                                                                                                                gcgcGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCTGCACAGCTGGTGATCGAggcgg  <  5:30242/149‑1 (MQ=255)
                                                                                                                                                |                                                                                                                                                    
GAGCGCGTCTGAGGGAGGCTGACACATGAGCATTGAAAAGATCGCCGTGATCGGCGCGGGCACCATGGGCAACGGCATTGCCCAGGTGTGCGCCATTGCCGGCTACCAGGTGCTGCTGGTGGATGTTTCCGACGCAGCGCTCGAGCGCGGTGTGGCCACCTTGAGCAAGAACCTCGAGCGCCAGGTCAGCAAGGGCACTCTCGACGCCGACAAGGCCGCAGCCGCCAAAGCCCGCATCCGTACCAGCACCGACTACACCCAGCTCAGCGCTGCACAGCTGGTGATCGAGGCGG  >  NC_002947/4284571‑4284863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.