New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4386246	42 (0.860)	3 (0.060)	3/250	NT	6.6%	coding (163/501 nt)	PP_3862	assembly protein
	?	NC_002947	= 4386266	45 (0.960)					coding (143/501 nt)	PP_3862	assembly protein

GATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTGCAGCTTGCGCGTCGCGTTGGCCAGCACCACCACGCCACGG  >  NC_002947/4386103‑4386391                                                                                                                                                |                                                                                                                                                  gATGAGTCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAgg                                                                                                                                              >  6:28691/1‑149 (MQ=255) gATGAGCCGACCACGCTTGAGCACATCGCGGTCGGCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGGAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAgg                                                                                                                                              <  2:152696/149‑1 (MQ=255) gATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAgg                                                                                                                                              >  6:86583/1‑149 (MQ=255)       ccGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCgg                                                                                                                                        >  6:118830/1‑149 (MQ=255)         gACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGgcg                                                                                                                                      >  8:220674/1‑149 (MQ=255)               gCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTc                                                                                                                                 >  6:61750/1‑148 (MQ=255)                    aGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAgcg                                                                                                                            >  5:61750‑M2/1‑145 (MQ=255)                      cacaACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAgcgggc                                                                                                                         >  1:219972‑M2/1‑143 (MQ=255)                        caACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCCCCACGCCCTGACTGCGGTCACCGATAAAGCCCGACAAGGCCTCGGCGCCTTCAAGCGGGCAg                                                                                                                       >  3:182021/1‑149 (MQ=255)                           cccGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGAc                                                                                                                    >  1:247950/1‑149 (MQ=255)                           cccGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGAc                                                                                                                    <  3:161153/149‑1 (MQ=255)                             cGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCttgaaggcgccgaggccttggcgggctttatcg                                                                                                                  <  1:277600‑M1/149‑34 (MQ=255)                             cGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGt                                                                                                                  <  5:86583/149‑1 (MQ=255)                                tCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTaaa                                                                                                               <  4:134196/149‑1 (MQ=255)                                 cGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAAc                                                                                                              <  6:25867/149‑1 (MQ=255)                                  gCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCCGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCttgaaggcgccgaggccttggcgggctttatcagatgg                                                                                                             >  5:267863‑M1/1‑111 (MQ=255)                                  gCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCttgaaggcgccgaggccttggcgggctttat                                                                                                                    <  6:267863‑M1/142‑32 (MQ=255)                                  gCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAAc                                                                                                              <  5:28691/148‑1 (MQ=255)                                   ccTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAAccc                                                                                                            >  3:31509/1‑149 (MQ=255)                                   ccTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACAACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAAccc                                                                                                            >  5:98146/1‑149 (MQ=255)                                       cgtcgGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTa                                                                                                         <  6:76611/148‑1 (MQ=255)                                            gtgtACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCgg                                                                                                                                        <  2:65019/112‑1 (MQ=255)                                            gtgtACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCgg                                                                                                                                        >  1:65019/1‑112 (MQ=255)                                             tgtACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTcc                                                                                                  <  5:189674/149‑1 (MQ=255)                                                  aaGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGgtg                                                                                             >  3:105179/1‑149 (MQ=255)                                                      ccACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTcc                                                                                         <  7:274345/149‑1 (MQ=255)                                                          ttCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACCCCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATgt                                                                                     >  6:4529/1‑149 (MQ=255)                                                            cACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATgtc                                                                                    <  4:105179/148‑1 (MQ=255)                                                            cACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATgtc                                                                                    <  2:247950/148‑1 (MQ=255)                                                                         gCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTcc                                                                                         >  2:56596/1‑130 (MQ=255)                                                                         gCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTcc                                                                                         <  1:56596/130‑1 (MQ=255)                                                                           cGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCgccg                                                                    >  5:124281/1‑149 (MQ=255)                                                                           cGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCgccg                                                                    >  7:5658/1‑149 (MQ=255)                                                                           cGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGAGTTCCATGTCGTCTTTCACTTCgccg                                                                    >  8:68055/1‑149 (MQ=255)                                                                              gCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCgccggcc                                                                 <  5:118830/149‑1 (MQ=255)                                                                                 ggCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTg                                                              >  4:11497/1‑149 (MQ=255)                                                                                             gATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGc                                                  <  8:126180/149‑1 (MQ=255)                                                                                                    caccacCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGctct                                           >  6:207896/1‑149 (MQ=255)                                                                                                       caccaGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTg                                          >  2:158032/1‑147 (MQ=255)                                                                                                       caccaGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTAACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTg                                          >  8:42649/1‑147 (MQ=255)                                                                                                           aGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTGCAGCtt                                    >  3:140670/1‑149 (MQ=255)                                                                                                              accacGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTGCAGCTTgcg                                 <  5:207896/149‑1 (MQ=255)                                                                                                               ccacGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGctct                                           <  8:39254/138‑1 (MQ=255)                                                                                                               ccacGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGctct                                           >  7:39254/1‑138 (MQ=255)                                                                                                                  cGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTGCAGCTTGcgcgtc                             <  5:4529/149‑1 (MQ=255)                                                                                                                        gACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGc                                                  <  2:283183/122‑1 (MQ=255)                                                                                                                        gACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGc                                                  >  1:283183/1‑122 (MQ=255)                                                                                                                         aCTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTGCAGCTTGCGCGTCGCGTTgg                      >  4:12862/1‑149 (MQ=255)                                                                                                                         aCTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTGCAGCTTGCGCGTCGCGTTg                       <  3:11497/148‑1 (MQ=255)                                                                                                                               ccatctgataaagCCCGCCAAGGCCTCGGCGCCTTCAAgcgggctttatcggtgaccgcagtcacggcgtggtgctggtggtgtcggatcggcggtaccgccggcccggcctgcagggcggtgaagtggccttgtacaccgacgaaggc                >  5:267863‑M2/7‑38 (MQ=255)                                                                                                                                    cGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAgcgggctttatcggtgaccgcagtcacggcgtggtgctggtggtgtcggatcggcggtaccgcctgcccggcctgcagggcggtgaagtggccttgtacaccgacgaaggcgaccg           <  1:277600‑M2/149‑117 (MQ=255)                                                                                                                                      aTAAAGCCCGCCAAGGCCTCGGCGCCTTCAAgcgggctttatcggtgaccgcagtcacggcgtggtgctggtggtgtcggatcggcggtaccgcctgcccggcctgcagggcggtgaagtggccttgtacaccgacgaaggc                <  6:267863‑M2/142‑112 (MQ=255)                                                                                                                                           gCCCGCttgaaggcgccgaggccttggcgggctttatcggtgaccgcagtcacggcgtggtgctggtggtgtcggatcggcggtaccgcctgcccggcctgcagggcggtgaagtggccttgtacaccgacgaaggcgaccgggttgtg    >  1:219972‑M1/1‑6 (MQ=255)                                                                                                                                           gCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTGCAGCTTGCGCGTCGCGTTGGCCAGCACCAccacgccac    >  8:35568/1‑149 (MQ=255)                                                                                                                                              cGCttgaaggcgccgaggccttggcgggctttatcggtgaccgcagtcacggcgtggtgctggtggtgtcggatcggcggtaccgcctgcccggcctgcagggcggtgaagtggccttgtacaccgacgaaggcgaccgggttgtgct  >  5:61750‑M1/1‑3 (MQ=255)                                                                                                                                                |                                                                                                                                                  GATGAGCCGACCACGCTTGAGCACAACCCGGTCGCCTTCGTCGGTGTACAAGGCCACTTCACCGCCCTGCAGGCCGGGCAGGCGGTACCGCCGATCCGACACCACCAGCACCACGCCGTGACTGCGGTCACCGATAAAGCCCGCCAAGGCCTCGGCGCCTTCAAGCGGGCAGGACGTAAACCCGTAGGGCTCCAGGTGTTCCATGTCGTCTTTCACTTCGCCGGCCGTGATGCGTAACTGCAGGCTCTGCAGCTTGCGCGTCGCGTTGGCCAGCACCACCACGCCACGG  >  NC_002947/4386103‑4386391

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.