New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4590013 =	43 (0.880)	3 (0.060)	3/250	NT	7.2%	coding (695/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta
	?	NC_002947	4590056 =	36 (0.770)					coding (738/1608 nt)	mccB	methylcrotonyl‑CoA carboxylase biotin‑containing subunit beta

GTGATGGGCTCGTGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCG  >  NC_002947/4589868‑4590132                                                                                                                                                  |                                                                                                                        gtgATGGGCTCGTGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCGAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGTTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTcg                                                                                                                       <  5:216817/148‑1 (MQ=255) cggaaccacgccgtacagctcatcggccgcataaagcggtgccactggtgccaaccgctgcagcttgccgagcttgtgccagttgaggttggccacactgcgtcgcgcgatggccagggcgtgttcgtcgttgtcggcataatggTcgg                                                                                                                      >  6:118654‑M1/146‑149 (MQ=255)  tgATGGGCTCGTGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCGTGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTcggc                                                                                                                     <  1:61439/149‑1 (MQ=255)        gCTCGTGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGcc                                                                                                               >  3:262569/1‑149 (MQ=255)        gCTCGTGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGcc                                                                                                               >  2:235879/1‑149 (MQ=255)         cTCGTGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGcc                                                                                                               >  1:62208/1‑148 (MQ=255)         cTCGTGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCg                                                                                                              <  1:235879/149‑1 (MQ=255)            gTGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGAtg                                                                                                           >  3:150939/1‑149 (MQ=255)             tGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAGGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGAtgt                                                                                                          <  4:294951/149‑1 (MQ=255)                aCCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCa                                                                                                       <  2:134300/149‑1 (MQ=255)                            gcgTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAg                                                                                           >  1:233852/1‑149 (MQ=255)                                 aaagcggtgccactggtgccaaccgctgcagcttgccgagcttgtgccagttgaggttggccacactgcgtcgcgcgatggccagggcgtgttcgtcgttgtcggcataatggt                                                                                                                         <  4:154736‑M1/1‑1 (MQ=255)                                 aaagcggtgccactggtgccaaccgctgcagcttgccgagcttgtgccagttgaggttggccacactgcgtcgcgcgatggccagggcgtgttcgtcgttgtcggcataatggt                                                                                                                         >  3:154736‑M1/114‑114 (MQ=255)                                       ggCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGcc                                                                                 >  1:29704/1‑148 (MQ=255)                                              gCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGa                                                                               <  1:90845/143‑1 (MQ=255)                                              gCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGa                                                                               >  2:90845/1‑143 (MQ=255)                                               ccGACGAAGCGATCATGGTGCGCCAGCACGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTAt                                                                        >  1:175062/1‑149 (MQ=255)                                                   ccaaccgctgcagcttgccgagcttgtgccagttgaggttgaccacactgcgtcgcgcgatggccagggcgtgttcgtcgttgtcggcataatggTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGcc                                                                     >  6:237978‑M1/96‑148 (MQ=255)                                                      aGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGcc                                                                                 <  2:273591/133‑1 (MQ=255)                                                      aGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGcc                                                                                 >  1:273591/1‑133 (MQ=255)                                                         gATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAacg                                                              <  4:150939/149‑1 (MQ=255)                                                          aTCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAacga                                                             >  7:290996/1‑149 (MQ=255)                                                           tCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAacgac                                                            <  5:147032/149‑1 (MQ=255)                                                              tGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGaa                                                         <  4:262569/149‑1 (MQ=255)                                                              tGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGaa                                                         >  8:28318/1‑149 (MQ=255)                                                                       agcagGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTg                                                <  2:175062/149‑1 (MQ=255)                                                                              gACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCTTCGCCTACCATTATGCCGACAACGAGGAACACGCCCTGTCCATct                                         <  4:195909/149‑2 (MQ=255)                                                                               ccagttgaggttggccacactgcgtcgcgcgatggccagggcgtgttcgtcgttgtcggcataatggTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGc                                                                                  >  1:295589‑M1/68‑107 (MQ=255)                                                                               ccagttgaggttggccacactgcgtcgcgcgatggccagggcgtgttcgtcgttgtcggcataatggTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGc                                                                                  <  2:295589‑M1/40‑1 (MQ=255)                                                                                 cATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATcgcgc                                      >  7:128510/1‑149 (MQ=255)                                                                                        cTCGCCGGCCCGCCGCTGGTGAAAGCCGCCTCCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAac                                                               >  1:23949/1‑117 (MQ=255)                                                                                        cTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAac                                                               <  2:23949/117‑1 (MQ=255)                                                                                         tCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAgcg                                                                                         <  5:96034/90‑1 (MQ=255)                                                                                         tCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAgcg                                                                                         >  6:96034/1‑90 (MQ=255)                                                                                           gCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAgtgt                            >  5:47517/1‑149 (MQ=255)                                                                                           gCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAgtg                             <  2:62208/148‑1 (MQ=255)                                                                                           gCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAgt                              <  1:267893/147‑1 (MQ=255)                                                                                             cGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTgg                          <  8:128510/149‑1 (MQ=255)                                                                                                   gccgcTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAAcc                    <  2:29704/149‑1 (MQ=255)                                                                                                       cTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCaa                <  8:20997/149‑1 (MQ=255)                                                                                                          gTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCAACTg             <  8:115453/149‑1 (MQ=255)                                                                                                            gAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCAACTgg            >  2:43822/1‑148 (MQ=255)                                                                                                            gAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCAACTgg            <  1:43822/148‑1 (MQ=255)                                                                                                             aaaGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCAACTGGca          <  8:290996/149‑1 (MQ=255)                                                                                                             aaaGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCAACTGGc           <  7:28318/148‑1 (MQ=255)                                                                                                              aaGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCAACTGGcac         <  6:183898/149‑1 (MQ=255)                                                                                                                     cACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCg  <  6:47517/149‑1 (MQ=255)                                                                                                                                          cGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAAc                     >  6:293144/1‑109 (MQ=255)                                                                                                                                          cGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAAc                     <  5:293144/109‑1 (MQ=255)                                                                                                                                          cGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTc                  >  4:290462/1‑112 (MQ=255)                                                                                                                                          cGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTc                  <  3:290462/112‑1 (MQ=255)                                                                                                                                                  |                                                                                                                        GTGATGGGCTCGTGCACCGCTGGCGGCGCGTACGTGCCGGCCATGGCCGACGAAGCGATCATGGTGCGCCAGCAGGCGACCATCTTCCTCGCCGGCCCGCCGCTGGTGAAAGCCGCCACCGGCGAAGTGGTGAGCGCCGAAGACCTCGGCGGCGCCGATGTGCATTGCCGCACCAGCGGCGTCGCCGACCATTATGCCGACAACGACGAACACGCCCTGGCCATCGCGCGACGCAGTGTGGCCAACCTCAACTGGCACAAGCTCG  >  NC_002947/4589868‑4590132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.