New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4806164	36 (0.740)	4 (0.080)	4/254	NT	8.6%	coding (1728/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase
	?	NC_002947	= 4806232	50 (1.050)					coding (1660/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase

CGTCCTGCTCCGGCTGGCTGATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCG  >  NC_002947/4806019‑4806311                                                                                                                                                  |                                                                                                                                                    cgTCCTGCTCCGGCTGGCTGATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTg                                                                                                                                                  >  5:84610/1‑149 (MQ=255)   tCCTGCTCCGGCTGGCTGATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGcc                                                                                                                                                >  8:189136/1‑149 (MQ=255)     cTGCTCCGGCTGGCTGATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCa                                                                                                                                              <  6:84610/149‑1 (MQ=255)           cGGCTGGCTGATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCgg                                                                                                                                        >  8:141250/1‑149 (MQ=255)             gctggctgATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTg                                                                                                                                      >  7:70949/1‑149 (MQ=255)                 gctgATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCTTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCg                                                                                                                                   <  5:22706/148‑1 (MQ=255)                   tgATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGata                                                                                                                                >  4:62893/1‑149 (MQ=255)                    gATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACATCCTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCCGTGCCCACCTCGGTGACGatat                                                                                                                               >  5:76420/1‑149 (MQ=255)                             cGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGGGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAgg                                                                                                                       <  1:187353/148‑1 (MQ=255)                                gTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGa                                                                                                                   >  4:163467/1‑149 (MQ=255)                                                aaTTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCgg                                                                                                                                        <  7:70817/112‑1 (MQ=255)                                                aaTTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCt                                                                                                   <  4:287364/149‑1 (MQ=255)                                                aaTTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCACAGCTCgg                                                                                                                                        >  8:70817/1‑112 (MQ=255)                                                 aTTGCAGCTCTGGCCATTCGTTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCTAGGAAATCGCTGACCACCAAAGCCTGGTAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCTGCCATCGGCGCt                                                                                                   <  6:76420/148‑1 (MQ=255)                                                        ctctGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGa                                                                                           <  3:163467/149‑1 (MQ=255)                                                             gCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGaca                                                                                         <  7:141250/146‑1 (MQ=255)                                                              ccATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTgg                                                                                     >  7:11200/1‑149 (MQ=255)                                                                      tGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggc                                                                             >  6:100520‑M2/1‑145 (MQ=255)                                                                        aCTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGgcgc                                                                           >  7:141823/1‑149 (MQ=255)                                                                           gCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGatggccagtgtcgagttcagcgccgatggccgcatcagcctgcgccatatcggcaccgagctgggcaccggc                                                                             <  7:16790‑M1/144‑73 (MQ=255)                                                                           gCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGatggccagtgtcgagttcagcgccgatggccgcatcagcctgcgccatatcggcaccgagctgggcaccggc                                                                             >  8:16790‑M1/1‑72 (MQ=255)                                                                            cAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCg                                                                       >  6:114810/1‑149 (MQ=255)                                                                                 ttCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAAcc                                                                  >  6:138841/1‑149 (MQ=255)                                                                                   cACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTg                                                                >  7:264764/1‑149 (MQ=255)                                                                                    aCCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGatggccagtgtcgagttcagcgccgatggccgcatcagcctgcgccatatcggcaccgagctgggcaccggcatgtccac                                                                     <  5:124827‑M1/143‑81 (MQ=255)                                                                                    aCCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGatggccagtgtcgagttcagcgccgatggccgcatcagcctgcgccatatcggcaccgagctgggcaccggcatgtccac                                                                     >  6:124827‑M1/1‑63 (MQ=255)                                                                                      cTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTAc                                                             >  3:110395/1‑149 (MQ=255)                                                                                                   cGGCCGAGGAAATCGCTGCCCACCAAAGCCTGGGAGGTGGACATGCCGGTACCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTg                                                <  3:174305/149‑1 (MQ=255)                                                                                                    ggCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTgg                                               <  8:11200/149‑1 (MQ=255)                                                                                                     gCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGc                                              <  7:189136/149‑1 (MQ=255)                                                                                                        gAGGAAATCGCTGACAACCAAAGCCTGGGAGGTGGACATGCCCGTGCCCAGCTCGGTGCCGATATCGCGCAGGATCATGCGCCCATCGGCGCTGAACTCGACACTGGCCAACGGCGCCTCGGAACCTGTACCGAAGTCCTTCTgg                                               >  4:188702/1‑145 (MQ=255)                                                                                                         aGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGAt                                          >  5:108980/1‑149 (MQ=255)                                                                                                          cctctatgCTGACCACCTAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGAt                                          <  1:103686/141‑1 (MQ=255)                                                                                                           gAAATCGCTGACCAGCCAAGCCTGGGAGGTGGAGATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGATGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATg                                         <  6:106201/148‑1 (MQ=255)                                                                                                           gAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATgg                                        >  3:153220/1‑149 (MQ=255)                                                                                                                       caccaAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGc                            >  1:97537/1‑149 (MQ=255)                                                                                                                       caccaAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGc                            <  4:110395/149‑1 (MQ=255)                                                                                                                       caccaAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGc                            >  7:49245/1‑149 (MQ=255)                                                                                                                              gCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGTAACCTGTACCGAATTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCa                     <  8:49245/149‑1 (MQ=255)                                                                                                                              gCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCa                     <  8:141823/149‑1 (MQ=255)                                                                                                                              gCCGGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGCAGCCGCCGCCGTAc                       >  3:135984/1‑147 (MQ=255)                                                                                                                                cTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGt                   >  1:129614/1‑149 (MQ=255)                                                                                                                                       gTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggcatgtccacctcccaggctttggtggtcagcgatttcctcggccgttcggccgacgaggt                  <  5:124827‑M2/143‑64 (MQ=255)                                                                                                                                       gTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggcatgtccacctcccaggctttggtggtcagcgatttcctcggccgttcggccgacgaggt                  >  6:124827‑M2/1‑80 (MQ=255)                                                                                                                                       gTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGATCCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCgg            <  5:138841/149‑1 (MQ=255)                                                                                                                                               gCCGatggccagtgtcgagttcagcgccgatggccgcatcagcctgcgccatatcggcaccgagctgggcaccggcatgtccacctcccaggctttggtggtcagcgatttcctcggccgttcggccgacgaggtgaagactgcagtca    >  6:100520‑M1/1‑4 (MQ=255)                                                                                                                                               gCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggcatgtccacctcccaggctttggtggtcagcgatttcctcggccgttcggccgacgaggtgaagactgc         <  7:16790‑M2/144‑73 (MQ=255)                                                                                                                                               gCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggcatgtccacctcccaggctttggtggtcagcgatttcctcggccgttcggccgacgaggtgaagactgc         >  8:16790‑M2/1‑72 (MQ=255)                                                                                                                                               gCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATAGGCGCTGAACTAGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACAAGTGGTCCGGGTCCTTgg    >  4:229888/1‑149 (MQ=255)                                                                                                                                                 cGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCg  >  7:82214/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CGTCCTGCTCCGGCTGGCTGATCAGGTACGGGTTTCCGCTGGTGCTCAATTGCAGCTCTGGCCATTCGGTGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCG  >  NC_002947/4806019‑4806311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.