New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4806164	36 (0.740)	4 (0.080)	4/254	NT	8.6%	coding (1728/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase
	?	NC_002947	= 4806232	50 (1.050)					coding (1660/2832 nt)	PP_4234	bifunctional aldehyde oxidase/xanthine dehydrogenase

TGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCGGCCTTGTCGAGGATCTC  >  NC_002947/4806088‑4806379                                                                                                                                                 |                                                                                                                                                    tGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggc                                                                                                                                                 >  6:100520‑M2/1‑145 (MQ=255)   aCTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGgcgc                                                                                                                                               >  7:141823/1‑149 (MQ=255)       cAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCg                                                                                                                                           >  6:114810/1‑149 (MQ=255)            ttCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAAcc                                                                                                                                      >  6:138841/1‑149 (MQ=255)              cACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTg                                                                                                                                    >  7:264764/1‑149 (MQ=255)                 cTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTAc                                                                                                                                 >  3:110395/1‑149 (MQ=255)                              cGGCCGAGGAAATCGCTGCCCACCAAAGCCTGGGAGGTGGACATGCCGGTACCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTg                                                                                                                    <  3:174305/149‑1 (MQ=255)                               ggCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTgg                                                                                                                   <  8:11200/149‑1 (MQ=255)                                gCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGc                                                                                                                  <  7:189136/149‑1 (MQ=255)                                   gAGGAAATCGCTGACAACCAAAGCCTGGGAGGTGGACATGCCCGTGCCCAGCTCGGTGCCGATATCGCGCAGGATCATGCGCCCATCGGCGCTGAACTCGACACTGGCCAACGGCGCCTCGGAACCTGTACCGAAGTCCTTCTgg                                                                                                                   >  4:188702/1‑145 (MQ=255)                                    aGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGAt                                                                                                              >  5:108980/1‑149 (MQ=255)                                     cctctatgCTGACCACCTAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGAt                                                                                                              <  1:103686/141‑1 (MQ=255)                                      gAAATCGCTGACCAGCCAAGCCTGGGAGGTGGAGATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGATGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATg                                                                                                             <  6:106201/148‑1 (MQ=255)                                      gAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATgg                                                                                                            >  3:153220/1‑149 (MQ=255)                                                  caccaAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGc                                                                                                >  7:49245/1‑149 (MQ=255)                                                  caccaAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGc                                                                                                >  1:97537/1‑149 (MQ=255)                                                  caccaAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGc                                                                                                <  4:110395/149‑1 (MQ=255)                                                         gCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGTAACCTGTACCGAATTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCa                                                                                         <  8:49245/149‑1 (MQ=255)                                                         gCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCa                                                                                         <  8:141823/149‑1 (MQ=255)                                                         gCCGGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGCAGCCGCCGCCGTAc                                                                                           >  3:135984/1‑147 (MQ=255)                                                           cTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGt                                                                                       >  1:129614/1‑149 (MQ=255)                                                                  gTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggcatgtccacctcccaggctttggtggtcagcgatttcctcggccgttcggccgacgaggt                                                                                      >  6:124827‑M2/1‑80 (MQ=255)                                                                  gTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggcatgtccacctcccaggctttggtggtcagcgatttcctcggccgttcggccgacgaggt                                                                                      <  5:124827‑M2/143‑64 (MQ=255)                                                                  gTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGATCCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCgg                                                                                <  5:138841/149‑1 (MQ=255)                                                                          gCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggcatgtccacctcccaggctttggtggtcagcgatttcctcggccgttcggccgacgaggtgaagactgc                                                                             >  8:16790‑M2/1‑72 (MQ=255)                                                                          gCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATcggcatgtccacctcccaggctttggtggtcagcgatttcctcggccgttcggccgacgaggtgaagactgc                                                                             <  7:16790‑M2/144‑73 (MQ=255)                                                                          gCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATAGGCGCTGAACTAGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACAAGTGGTCCGGGTCCTTgg                                                                        >  4:229888/1‑149 (MQ=255)                                                                            cGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCg                                                                      >  7:82214/1‑149 (MQ=255)                                                                                 cccAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCAt                                                                 >  3:105997/1‑149 (MQ=255)                                                                                   cAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCt                                                               <  5:114810/149‑1 (MQ=255)                                                                                          gTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGAc                                                                                                  >  8:21431/1‑107 (MQ=255)                                                                                          gTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGAc                                                                                                  <  7:21431/107‑1 (MQ=255)                                                                                                atatGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCGTTCTGGCATATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCgtgt                                                  <  8:264764/149‑1 (MQ=255)                                                                                                    ggCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGt                                                             >  8:235233/1‑134 (MQ=255)                                                                                                    ggCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGt                                                             <  7:235233/134‑1 (MQ=255)                                                                                                     gcgcAGGCTGATGGGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCa                                                                  <  5:65538/128‑1 (MQ=255)                                                                                                     gcgcAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCa                                                                  >  6:65538/1‑128 (MQ=255)                                                                                                        cAGTCTGATGCGGACATCTTCTCTGAACTCGACACTGTACATAGTATACTCGTAACCTGTACGGAATTACTTATGTCAGATGGCTAAGCCGACGCCGTACCAGTGGTGCGGGTCCTTGGCGTCCATCTGTTGCTTTAGTTTATCGCTGt                                          <  4:135984/149‑1 (MQ=255)                                                                                                               aTGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTc                                                                                   >  1:241938/1‑101 (MQ=255)                                                                                                               aTGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTc                                                                                   <  2:241938/101‑1 (MQ=255)                                                                                                               aTGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTgcgc                                     <  2:25905/147‑1 (MQ=255)                                                                                                               aTGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGcca                                   <  8:82214/149‑1 (MQ=255)                                                                                                               aTGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGcca                                   <  2:97537/149‑1 (MQ=255)                                                                                                                 gCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGccac                                  >  2:177104/1‑148 (MQ=255)                                                                                                                 gCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGccac                                  >  3:122771/1‑148 (MQ=255)                                                                                                                 gCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGccac                                  <  4:153220/148‑1 (MQ=255)                                                                                                                   ggCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGccacca                                >  8:266161/1‑148 (MQ=255)                                                                                                                         cGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTg                          >  8:100087/1‑148 (MQ=255)                                                                                                                          ggggcTGAACTCGTCACTGGCCATCGGCGCCTCGGAACGTGTACCGAAGTCCTTCTGGCATATGGCGATGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGAGTGTATCGCGGTTGCGCCACGACTCGTGca                        <  3:188702/146‑1 (MQ=255)                                                                                                                             gcTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAg                     <  3:7127/149‑1 (MQ=255)                                                                                                                                 aaCTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCg                   <  7:100087/147‑1 (MQ=255)                                                                                                                                   cTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCGGCCt               >  5:282704/1‑149 (MQ=255)                                                                                                                                      gACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCGGCCTTg             >  2:308118/1‑148 (MQ=255)                                                                                                                                      gACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCGGCCTTGt            <  2:129614/149‑1 (MQ=255)                                                                                                                                      gACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCGGCCTTGt            <  1:308118/149‑1 (MQ=255)                                                                                                                                           tGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCGGCCTTGTCGAg        >  5:303497/1‑148 (MQ=255)                                                                                                                                             gCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGTTCCTTGGCGTCCAGCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCGGCCTTGTCGAGGa      <  3:229888/148‑1 (MQ=255)                                                                                                                                                aTCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCGGCCTTGTCGAGGAtctc  <  1:177104/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    TGACTGCAGTCTTCACCTCGTCGGCCGAACGGCCGAGGAAATCGCTGACCACCAAAGCCTGGGAGGTGGACATGCCGGTGCCCAGCTCGGTGCCGATATGGCGCAGGCTGATGCGGCCATCGGCGCTGAACTCGACACTGGCCATCGGCGCCTCGGAACCTGTACCGAAGTCCTTCTGGCAGATGGCGAAGCCGACGCCGTACCAGTGGTCCGGGTCCTTGGCGTCCATCTGTTGCTTGCGTGTATCGCGGTTGCGCCACCACTCGTGCACAGCGGCCTTGTCGAGGATCTC  >  NC_002947/4806088‑4806379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.