New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4825882 =	46 (0.940)	3 (0.060)	3/252	NT	6.4%	coding (5308/12954 nt)	pvdL	non‑ribosomal peptide synthetase
	?	NC_002947	4825929 =	44 (0.940)					coding (5261/12954 nt)	pvdL	non‑ribosomal peptide synthetase

TGGTCGTCGGCCAGTTGTTGCAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGCCAGAGGAACCACATTCGCTGCTGC  >  NC_002947/4825734‑4826018                                                                                                                                                     |                                                                                                                                         tGGTCGTCGGCCAGTTGTTGCAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTc                                                                                                                                          >  5:44592/1‑149 (MQ=255)   gtcgtcGGCCAGTTGTTGCAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGt                                                                                                                                        <  7:167588/149‑1 (MQ=255)   gtcgtcGGCCAGTTGTTGCAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGt                                                                                                                                        <  4:198369/149‑1 (MQ=255)   ctgcaaggtgcaatcacccgtgtcgaccgccgtcaggcagtgccgctgtcgtactcgcagcagcgaatgtggttcctctggcagatggagccggacagcccggcgtacaacgtcggcggcatggcacgcctgcgcggcaccctgcaCGt                                                                                                                                        <  5:237470‑M1/3‑1 (MQ=255)      caaggtgcaatcacccgtgtcgaccgccgtcaggcagtgccgctgtcgtactcgcagcagcgaatgtggttcctctggcagatggagccggacagcccggcgtacaacgtcggcggcatggcacgcctgcgcggcaccctgcaCGTgg                                                                                                                                      >  8:6932‑M1/144‑148 (MQ=255)      caaggtgcaatcacccgtgtcgaccgccgtcaggcagtgccgctgtcgtactcgcagcagcgaatgtggttcctctggcagatggagccggacagcccggcgtacaacgtcggcggcatggcacgcctgcgcggcaccctgcaCGTgg                                                                                                                                      >  1:293291‑M1/144‑148 (MQ=255)          gCCAGTTGTTGCAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCAc                                                                                                                                 >  7:194148/1‑149 (MQ=255)             aGTTGTTGCAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGAt                                                                                                                              <  1:26179/149‑1 (MQ=255)                 gttgCAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAg                                                                                                                           <  2:303117/148‑1 (MQ=255)                     cAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCt                                                                                                                      >  6:74977/1‑149 (MQ=255)                     cAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTCAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGCTGCGCAAGGTTTCGTGGCGCACGAACAGCGCCt                                                                                                                      >  2:14385/1‑149 (MQ=255)                      aaaCGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTg                                                                                                                     >  2:186833/1‑149 (MQ=255)                          gTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGcc                                                                                                                       >  3:114609/1‑143 (MQ=255)                          gTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGcc                                                                                                                       <  4:114609/143‑1 (MQ=255)                           ttGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAgcg                                                                                                                >  4:150153/1‑149 (MQ=255)                              cTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCAc                                                                                                             >  3:259855/1‑149 (MQ=255)                                 gcaggcaTCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCt                                                                                                          >  6:285952/1‑149 (MQ=255)                                      caTCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAg                                                                                                     <  5:229461/149‑1 (MQ=255)                                      caTCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAg                                                                                                     <  8:194148/149‑1 (MQ=255)                                        tCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGc                                                                                                   <  5:285952/149‑1 (MQ=255)                                              gACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCAc                                                                                             >  6:273107/1‑149 (MQ=255)                                                 aaaGCGCTGAAGTCTTGCCAGTCCAGATGCAGGACGCTGTCTTCGGCCACGAACTGGTACGGCAAGCCGTCGATGCTGGGGAACGTGGTTCGCAATGTTTCGTGGCGCAGGATCAGCGCCTGCAGCGCACGCTCGAAgtcgtcaaagt                                                                                           >  6:102070/1‑143 (MQ=255)                                                   tcgtactcgcagcagcgaatgtggttcctctggcagatggagccggacagcccggcgtacaacgtcggcggcatggcacgcctgcgcggcaccctgcaCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTg                                                                                          >  2:9244‑M1/99‑147 (MQ=255)                                                                 gCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCa                                                                            <  4:259855/147‑1 (MQ=255)                                                                  ccAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGc                                                                         >  8:19894/1‑149 (MQ=255)                                                                      tCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGc                                                                     <  7:19894/149‑1 (MQ=255)                                                                        cAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCa                                                                   >  7:103209/1‑149 (MQ=255)                                                                               atgCCGCTGTCTTCGGCCAAGCACTGGTACGGCACGCCGTCGATGCTGGGGAAAGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGAGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATgccgac                                                            >  8:167696/3‑147 (MQ=255)                                                                               aGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGaa                                                                                                      <  4:23537/107‑1 (MQ=255)                                                                               aGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGaa                                                                                                      >  3:23537/1‑107 (MQ=255)                                                                                 gCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGa                                                          <  7:127180/149‑1 (MQ=255)                                                                                     agatggagccggacagcccggcgtacaacgtcggcggcatggcacgcctgcgcggcaccctgcaCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAg                                                                                       >  4:281292‑M1/65‑116 (MQ=255)                                                                                     agatggagccggacagcccggcgtacaacgtcggcggcatggcacgcctgcgcggcaccctgcaCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAg                                                                                       <  3:281292‑M1/52‑1 (MQ=255)                                                                                        tCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTg                                                     <  3:150153/147‑1 (MQ=255)                                                                                        tCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGt                                                    <  2:233346/148‑1 (MQ=255)                                                                                          ttCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGcc                                                                    <  1:122508/130‑1 (MQ=255)                                                                                            cGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATgccgc                                                             <  7:239457/135‑1 (MQ=255)                                                                                            cGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATgccgc                                                             >  8:239457/1‑135 (MQ=255)                                                                                              gCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCgg                                             <  6:44592/149‑1 (MQ=255)                                                                                                         gTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAg                                                                           >  4:162267/1‑108 (MQ=255)                                                                                                         gTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAg                                                                           <  3:162267/108‑1 (MQ=255)                                                                                                         gTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCgg                                    <  8:103209/147‑1 (MQ=255)                                                                                                         gTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCt                                  <  4:273919/149‑1 (MQ=255)                                                                                                                 cggcgtcgtTGCTGGTGAAGGTGGTGCGCAAGGTTTCGTGGGGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGACATGCCGCCGACGTTGTACTCCGGGCTGTCCGGCTCCATCTGc                          <  1:14385/146‑1 (MQ=255)                                                                                                                  gCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGc                          >  2:191917/1‑148 (MQ=255)                                                                                                                    cGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGc                          >  8:218556/1‑146 (MQ=255)                                                                                                                            cTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGCCAGAGGAACca               <  4:134673/149‑1 (MQ=255)                                                                                                                              ggggAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGCCAGAGGAAcc                <  4:86543/146‑1 (MQ=255)                                                                                                                              ggggAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGCCAGAGGAAcc                >  3:86543/1‑146 (MQ=255)                                                                                                                              ggggAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGACAGCCCGGcgtaca                              <  7:215264/132‑6 (MQ=255)                                                                                                                              ggggAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGACAGCCCGGcgtaca                              >  8:215264/1‑127 (MQ=255)                                                                                                                                  aaCGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGCCAGAGGAACCACATTCg         >  7:173951/1‑149 (MQ=255)                                                                                                                                    cGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGCCAGAGGAACCACATTCgct       <  1:191917/149‑1 (MQ=255)                                                                                                                                     gtggtgCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGCCAGAGGAACCACATTCgctg      >  1:61926/1‑149 (MQ=255)                                                                                                                                           cgcAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGCCAGAGGAACCACATTCGCtgctgc  >  2:101412/1‑147 (MQ=255)                                                                                                                                                     |                                                                                                                                         TGGTCGTCGGCCAGTTGTTGCAAACGTTGCTGGCAGGCATCGTCTGACAAAGCGCTGAAGTCTTGCCAGTCCAGATGCAGGCCGCTGTCTTCGGCCACGCACTGGTACGGCACGCCGTCGATGCTGGGGAACGTGGTGCGCAAGGTTTCGTGGCGCACGATCAGCGCCTGCAGCGCACGCTCGAAGGCGTCCACGTGCAGGGTGCCGCGCAGGCGTGCCATGCCGCCGACGTTGTACGCCGGGCTGTCCGGCTCCATCTGCCAGAGGAACCACATTCGCTGCTGC  >  NC_002947/4825734‑4826018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.