New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 4921664 | 42 (0.860) | 5 (0.110) | 4/250 | NT | 11.1% | coding (2073/2682 nt) | PP_4330 | toxin‑like protein |
? | NC_002947 | = 4921727 | 40 (0.860) | coding (2136/2682 nt) | PP_4330 | toxin‑like protein |
CATGCGCCTGTTTCTGTCGAAGGCTTCGCCTACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCCTGCTGCCGGACGGCAAGGGCGAAACGA > NC_002947/4921517‑4921812 | cATGCGCCTGTTTCTGTCGAAGGCTTCGCCTACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGCTCCGCTATTACGCGCAG > 3:185551‑M1/1‑148 (MQ=255) cATGCGCCTGTTTCTGTCGAAGGCTTCGCCTACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAG > 7:253410‑M1/1‑148 (MQ=255) gcgcCTGTTTCTGTCGAAGGCTTCGCCTACCGCTTACGAACAGAACGCGAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTAc > 7:258576/1‑148 (MQ=255) tGTTTCTGTCGAAGGCTTCGCCTACCGCTTACGAACAGAACGCAAGGCTATTCGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTCAAGAGCAAGGCTTCTTCCGGCCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCa > 5:30639/1‑149 (MQ=255) aaGGCTTCGCCTACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATgg > 3:76288/1‑149 (MQ=255) cTTCGCCTACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGcacatcggtcgcagacgcgtaatt > 8:87097‑M1/1‑125 (MQ=255) cTTCGCCTACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAAc > 2:167260/1‑149 (MQ=255) ttCGCCTACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTCCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACg > 2:141710/1‑149 (MQ=255) tttttACCTCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCATGGTTGCAGGTATTGCCGTTTGAAGAGCAAGGCTTCTTCCGTGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGt < 7:111290/145‑1 (MQ=255) gCCTACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTg > 3:241799/1‑149 (MQ=255) tACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCa > 3:298453/1‑149 (MQ=255) aCCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCATCGCTGTATGGCAACTGttata > 8:111290/1‑144 (MQ=255) gCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGc < 1:167260/149‑1 (MQ=255) cGAACAGTACGCAAGGCTATTGGGAGCCCGGTCGCCAGGGCTGCAGGTATTGGCGCTTTAAGAGCATGGCTTCTTGCGGGCCTTCTGCCAGAGCCGCTATTACGCGGAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATGGccacc < 6:30639/148‑1 (MQ=255) gAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCGATGccaccgt < 2:49612/149‑3 (MQ=255) aaGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTg > 4:210179/1‑149 (MQ=255) ggCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGcacatcggtcgcagacgcgtaattggtggcgatgccaccgttgccatccagcgc > 5:258070‑M1/1‑95 (MQ=255) ggCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGc > 7:11899/1‑148 (MQ=255) atacctgCAGCCCTGGGGCCCGGGCTGCCGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCt < 1:126748/138‑1 (MQ=255) atacctgCAGCCCTGGGGCCCGGGCTGCCGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCt > 2:126748/7‑144 (MQ=255) ggCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGAt < 4:241799/148‑1 (MQ=255) gCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGAtgt > 3:248353/1‑149 (MQ=255) gCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGAtgt > 8:11911/1‑149 (MQ=255) cAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGAtgtg < 4:248353/149‑1 (MQ=255) aGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGc > 4:91491‑M2/1‑148 (MQ=255) cccGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGctg > 4:76288‑M2/1‑146 (MQ=255) ccGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGctgc < 8:78322‑M2/149‑5 (MQ=255) gggCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGcacatcggtcgcagacgcgtaattggtggcgatgccaccgttgccatccagcgctgcctcgtactgcgc < 6:258070‑M1/149‑70 (MQ=255) gggCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGcacatcggtcgcagacgcgtaattggtggcgatgccaccgttgccatccagcgctgcctcgtactgcgc < 7:87097‑M1/149‑70 (MQ=255) cccAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTAcc < 1:141710/149‑1 (MQ=255) cAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCg > 1:295700/1‑148 (MQ=255) aGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGcacatcggtcgcagacgcgtaattggtggcgatgccaccgttgccatccagcgctgcctcgtactgcgcgtaatag < 6:132525‑M1/149‑77 (MQ=255) gTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTGCCGGATGCTGCACCa > 6:202175/1‑149 (MQ=255) gCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAgg > 8:179330/1‑149 (MQ=255) ccGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGAAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAggg > 1:233761/1‑149 (MQ=255) cGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGt > 8:176554/1‑149 (MQ=255) cGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGt < 3:210179/149‑1 (MQ=255) agagCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGt < 3:43703/149‑1 (MQ=255) aaGGCGTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACAtg < 8:254052/149‑1 (MQ=255) ggCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACAtgga > 1:488/1‑149 (MQ=255) gCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACAtggac < 4:298453/149‑1 (MQ=255) ccGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACAtggacgtggac > 5:216377/1‑148 (MQ=255) gCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAGCGGTGGCTTCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTgg > 1:11187/1‑125 (MQ=255) gCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAGCGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTgg < 2:11187/125‑1 (MQ=255) cTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCct < 7:176554/147‑1 (MQ=255) ccAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGATTTCCtgctgc > 1:153324/1‑149 (MQ=255) ccAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCctgc < 2:295700/146‑1 (MQ=255) gCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCCTGCTGCCGGAc < 7:11911/149‑1 (MQ=255) ccGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACGGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCCTGCTGCCGGACg < 4:185551/149‑1 (MQ=255) gCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCCTGCTGCCGGACgg > 6:167537/1‑148 (MQ=255) gCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCCTGCTGCCGGACGGc < 3:225008/149‑1 (MQ=255) cTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGctgcgcgtaatagcggctctggcagaaggcccggaagaagccttgctcttcaagcggcaatacctgcagccct < 6:132525‑M2/149‑74 (MQ=255) tATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCATTTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCGTTACATGGACGTGGACGACTTCCTGCTGGCGGACGGc > 6:138445/1‑147 (MQ=255) aCGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCCTGCTGCCGTCCGGCagcag < 7:78322/148‑5 (MQ=255) gcgcAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGctgcgcgtaatagcggctctggcagaaggcccggaagaagccttgctcttcaagcggcaatacctgcagccctggggccc < 7:87097‑M2/149‑81 (MQ=255) gcgcAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGctgcgcgtaatagcggctctggcagaaggcccggaagaagccttgctcttcaagcggcaatacctgcagccctggggccc < 6:258070‑M2/149‑81 (MQ=255) cgcAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTGCCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCCTGCTGCCGGACGGCAAGGGCGaa < 5:202175/149‑1 (MQ=255) gcagcacatcggtcgcagacgcgtaattggtggcgatgccaccgttgccatccagcgctgcctcgtactgcgcgtaatagcggctctggcagaaggcccggaagaagccttgctcttcaagcggcaatacctgcagccctggggcccgg < 8:78322‑M1/149‑146 (MQ=255) gcAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCCTGCTGCCGGACGGCAAGGGCGaaa > 1:265922/1‑149 (MQ=255) cagcacatcggtcgcagacgcgtaattggtggcgatgccaccgttgccatccagcgctgcctcgtactgcgcgtaatagcggctctggcagaaggcccggaagaagccttgctcttcaagcggcaatacctgcagccctggggcccggg > 4:76288‑M1/1‑3 (MQ=255) gcacatcggtcgcagacgcgtaattggtggcgatgccaccgttgccatccagcgctgcctcgtactgcgcgtaatagcggctctggcagaaggcccggaagaagccttgctcttcaagcggcaatacctgcagccctggggcccgggct > 4:91491‑M1/1‑1 (MQ=255) | CATGCGCCTGTTTCTGTCGAAGGCTTCGCCTACCGCTTACGAACAGAACGCAAGGCTATTGGCAGCCCGGGCCCCAGGGCTGCAGGTATTGCCGCTTGAAGAGCAAGGCTTCTTCCGGGCCTTCTGCCAGAGCCGCTATTACGCGCAGTACGAGGCAGCGCTGGATGGCAACGGTGGCATCGCCACCAATTACGCGTCTGCGACCGATGTGCTGCGCTACCGGATGCTGCACCATGAGGGTGGGCTGTACATGGACGTGGACGACTTCCTGCTGCCGGACGGCAAGGGCGAAACGA > NC_002947/4921517‑4921812 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |