New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4953460 = | 45 (0.920) | 3 (0.070) | 3/246 | NT | 7.0% | coding (972/1692 nt) | PP_4363 | two‑component system sensor histidine kinase/response regulator |
? | NC_002947 | 4953515 = | 37 (0.810) | coding (917/1692 nt) | PP_4363 | two‑component system sensor histidine kinase/response regulator |
TCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCAT > NC_002947/4953314‑4953605 | tCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGa > 5:120946/1‑149 (MQ=255) gctcaatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgat < 1:86793‑M1/1‑1 (MQ=255) ctcaatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctgtcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgat > 8:197020‑M1/147‑147 (MQ=255) ctcaatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGa < 4:79529‑M1/3‑1 (MQ=255) tcaatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGa < 2:273239‑M1/3‑1 (MQ=255) caatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGa < 2:4484‑M1/3‑1 (MQ=255) caatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGa < 5:180257‑M1/3‑1 (MQ=255) aatctcagcatgcagcgcggctcggtggaggtgtggaatggcggtatgcctgatggctatcgcctgtcggtggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGAca > 1:306735‑M1/144‑148 (MQ=255) cTGCCCACCAAAACGCTCCTGGGCCAGCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGCCagcagc > 5:173903/1‑148 (MQ=255) cccACCAAAACGCTCCAGGGCCAGCATCAGTCTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCaa > 1:184384/1‑148 (MQ=255) caccaAAACGCTCCAGGGCCAGCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAgg > 2:86793/1‑149 (MQ=255) accaAAACGCTCCAGGGCCAGCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGgc > 3:60188/1‑149 (MQ=255) ccaAAACGCTCCAGGGCCAGCATCAG‑ATCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGgcg > 1:4484/1‑149 (MQ=255) caAAACGCTCCAGGGCCCGCATCAG‑CTCATCGACCAACTTCACCGGGTCGCGGTTGTCGGCCAGCCCCGCTCGCCGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTGGGCGGTATCGAGCACACCGTCTGCCAGCAGCAACAGgcgg > 4:30232/1‑148 (MQ=255) cAGGGCCAGCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGt < 4:278270/148‑1 (MQ=255) cAGGGCCAGCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTg > 1:191120/1‑149 (MQ=255) ggCCAGCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGc > 5:208686/1‑147 (MQ=255) gCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGAcagca > 5:100141/1‑120 (MQ=255) gCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGAcagca < 6:100141/120‑1 (MQ=255) aTCAC‑CTCACCGAACAACTTCACCCGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCaa < 4:228749/149‑1 (MQ=255) tCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAac < 6:208686/149‑1 (MQ=255) aG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAacac < 2:191120/149‑1 (MQ=255) aTCGCACAACTTCACAGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACACGCATTCCTGGTCGACGGCGGTATCGATCCCACCGTCTCACCGCAGCAACCGGCGCTCGccc > 6:151011/1‑127 (MQ=255) aTCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCTGGCGCTGTACGCCAAACTGGCATTCCTGGTGGTCGGCGGTATCGATGACACCGTCTGACAGCAGCAACAGGCGCTCGccc < 5:151011/127‑1 (MQ=255) cACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGAcag < 5:219629/96‑1 (MQ=255) cACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGAcag > 6:219629/1‑96 (MQ=255) cACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATc < 4:60188/147‑1 (MQ=255) gggTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACg < 2:184384/149‑1 (MQ=255) gcctgtcgggggatggccaagtgctgtcggcactgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCa > 5:254700‑M1/83‑149 (MQ=255) gcgGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCCACACCTCCGTGCTGTCATCGAAACGCTccg > 3:224912/1‑147 (MQ=255) gCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCAt > 6:279552/1‑127 (MQ=255) gCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCAt < 5:279552/127‑1 (MQ=255) gCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAAt > 8:79176/1‑149 (MQ=255) cACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGcc > 5:260661/1‑147 (MQ=255) gCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAgg > 5:183108/1‑149 (MQ=255) tgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAAc < 5:277627‑M1/62‑1 (MQ=255) tgagttcgcggcacctgccgctgggcattctggccgctgagcgtttcgaTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAAc > 6:277627‑M1/50‑111 (MQ=255) aCGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACt > 3:79529/1‑149 (MQ=255) cGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACt < 7:79176/148‑1 (MQ=255) gCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACt > 1:138536/1‑147 (MQ=255) cAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCg < 3:30232/149‑1 (MQ=255) ggCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGAc < 6:183108/149‑1 (MQ=255) ggCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGAc < 2:138536/149‑1 (MQ=255) aTTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAg > 5:109721/1‑148 (MQ=255) tCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCAc > 5:22530/1‑149 (MQ=255) tGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGACGCGAACTCAGTGCCGACAGCACTTg > 7:138888/1‑149 (MQ=255) tcgGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATc < 6:260661/149‑1 (MQ=255) gTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGa > 3:253573/1‑149 (MQ=255) gTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGa > 7:229963/1‑149 (MQ=255) tATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGAc < 4:253573/149‑1 (MQ=255) gATCACACCGTCTGACAGCAGCAACAGGCGCACGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGc > 6:254592/1‑149 (MQ=255) aTCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCATCACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAg < 1:157234/125‑1 (MQ=255) aTCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCATCACCTCCGTGCTCTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAg > 2:157234/1‑125 (MQ=255) acacCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGa > 1:273239/1‑147 (MQ=255) acacCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGa > 6:56051/1‑147 (MQ=255) cacCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCTGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAg > 4:36846/1‑149 (MQ=255) cGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCa > 4:264915/1‑149 (MQ=255) gTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCAt < 5:56051/149‑1 (MQ=255) tCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCGCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATa < 3:260469/143‑1 (MQ=255) tCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCACCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATa > 4:260469/1‑143 (MQ=255) | TCGCGTGGCTGCCCACCAAAACGCTCCAGGGCCAGCATCAG‑CTCATCGAACAACTTCACCGGGTCGCGGTTGTCGGCCAGCACCGCTCGCAGGCGCTGTACGCCAAACAGGCATTCCTGGTCGTCGGCGGTATCGATCACACCGTCTGACAGCAGCAACAGGCGCTCGCCCGGTGCCAGCGGCAACACCTCCGTGCTGTCATCGAAACGCTCAGCGGCCAGAATGCCCAGCGGCAGGTGCCGCGAACTCAGTGCCGACAGCACTTGGCCATCCACCGACAGGCGATAGCCAT > NC_002947/4953314‑4953605 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |