New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5201579 =	37 (0.760)	4 (0.110)	4/188	NT	18.4%	intergenic (‑65/‑115)	PP_4582/PP_4583	membrane protein/putative Peptidase
	?	NC_002947	5201674 =	9 (0.260)					intergenic (‑160/‑20)	PP_4582/PP_4583	membrane protein/putative Peptidase

GCTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAA  >  NC_002947/5201436‑5201726                                                                                                                                                 |                                                                                                                                                     gCTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCt                                                                                                                                                 >  7:112011/1‑149 (MQ=255) cctggtaggcgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGc                                                                                                                                                   >  6:145024‑M1/145‑148 (MQ=255)  ctggtaggcgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagttcctg                                                                                                                                                 <  1:263755‑M1/6‑5 (MQ=255)  cTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAATGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAACGACTTTTCCGGGCGCAGACAGTGTTTGCCt                                                                                                                                                 <  1:180550/149‑1 (MQ=255)  cTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCtg                                                                                                                                                >  3:286431/1‑149 (MQ=255)     gtaggcgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCtgt                                                                                                                                               >  4:131365‑M1/141‑148 (MQ=255)     gAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCtgt                                                                                                                                               <  8:168671/147‑1 (MQ=255)         cccACCAGCAGGCACCCTAAGGCGGCTACTGCGTACACGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGc                                                                                                                                         <  4:189026/149‑1 (MQ=255)          cgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttggagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGc                                                                                                                                         >  2:92085‑M1/136‑149 (MQ=255)          cgttttcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTgtgccagc                                                                                                                                         >  5:264944‑M1/136‑146 (MQ=255)            accaGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCctc                                                                                                                                      >  7:75376/1‑149 (MQ=255)               tcagcttgcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCtt                                                                                                                                    <  5:70603‑M1/19‑1 (MQ=255)                   ggCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑gg                                                                                                                              <  6:191459/149‑1 (MQ=255)                   ggCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGCTCTCGGTCATGTTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑gg                                                                                                                              <  7:162354/149‑1 (MQ=255)                     gcaggtaagcgagtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggagggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑ggg                                                                                                                             <  1:87882‑M1/25‑1 (MQ=255)                             ggcggcTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGc                                                                                                                    <  4:286431/149‑1 (MQ=255)                                gagtacctcgggggtgtcgcgctgtggcagccaggcatacgggccgggggccgggtcggcgtgggcaatcgggggttggggcgtggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTc                                                                                                                  >  4:280009‑M1/114‑149 (MQ=255)                                 gcTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCt                                                                                                                <  3:20136/149‑1 (MQ=255)                                 gcTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCt                                                                                                                <  5:275738/149‑1 (MQ=255)                                 agtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTcc                                                                                                                 <  6:210135‑M1/37‑1 (MQ=255)                                 agtacctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTc                                                                                                                  <  5:261618‑M1/36‑1 (MQ=255)                                     cctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑gg                                                                                                                              >  7:151699‑M1/109‑132 (MQ=255)                                     cctcgggggtgtcgcgctgttgcagccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑gg                                                                                                                              <  8:151699‑M1/24‑1 (MQ=255)                                     cTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCt                                                                                                            <  4:244080/149‑1 (MQ=255)                                           aCAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGc                                                                                                      >  1:52338/1‑149 (MQ=255)                                            cAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGc                                                                                                      >  6:198590/1‑148 (MQ=255)                                                       cGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTgg                                                                                          <  5:198590/149‑1 (MQ=255)                                                        gAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACACGCTCCTACCTCGGTGCGATcccgtttg                                                                                           >  7:133560/1‑142 (MQ=255)                                                          aGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGc                                                                                       <  8:75376/149‑1 (MQ=255)                                                           ggTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACCTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCg                                                                                      <  4:274890/149‑1 (MQ=255)                                                            gtgtAGTCGTTCTCGTTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                                                     <  4:262589/149‑1 (MQ=255)                                                            gtgtAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCgg                                                                                     <  8:102908/149‑1 (MQ=255)                                                            agccaggcatacgggtcggtggcctggtcggcttgggcaatcgggggttggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCg                                                                                      >  2:95892‑M1/86‑149 (MQ=255)                                                              gtAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCg                                                                                                          <  6:59104/126‑1 (MQ=255)                                                              gtAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCg                                                                                                          >  5:59104/1‑126 (MQ=255)                                                               tAGTCTTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGTGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGt                                                                                   <  3:210822/148‑1 (MQ=255)                                                                   catacgggtcggtggcctggtcggcttgggcaatcgggggtgggggcttggttggcattgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTAc                                                                               >  5:210135‑M1/79‑149 (MQ=255)                                                                                   gtTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGca                                                              >  2:219919/1‑149 (MQ=255)                                                                                        tGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGCGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTAc                                                                               <  7:129768/127‑1 (MQ=255)                                                                                        tGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGCGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTAc                                                                               >  8:129768/1‑127 (MQ=255)                                                                                            aGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTTAACCCGCTGCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTAACCGCGAAGAGGGCGGCACCGGGaaag                                                     >  3:109078/1‑147 (MQ=38)                                                                                               cAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCt                                                                                               >  4:207352/1‑104 (MQ=255)                                                                                               cAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCt                                                                                               >  4:203352/1‑104 (MQ=255)                                                                                               cAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCt                                                                                               <  3:207352/104‑1 (MQ=255)                                                                                               cAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCt                                                                                               <  3:203352/104‑1 (MQ=255)                                                                                                         gaTGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGAc                                        >  1:223645/1‑149 (MQ=255)                                                                                                                  gATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTAc                                                                               >  1:193194/1‑101 (MQ=255)                                                                                                                  gATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTAc                                                                               <  2:193194/101‑1 (MQ=255)                                                                                                                       ac‑acTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTc                                                                                                                  >  5:163129/1‑61 (MQ=255)                                                                                                                       ac‑acTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTc                                                                                                                  <  6:163129/61‑1 (MQ=255)                                                                                                                           attgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCggg                                                                                    >  7:270927‑M1/23‑88 (MQ=255)                                                                                                                           attgaaggtctcttgattggagTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCggg                                                                                    <  8:270927‑M1/66‑1 (MQ=255)                                                                                                                                      gcAGACAGTGTTTGCCTGTGCCGGCCTCTTCGCGGGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCCCAGGCAACTCCAATCAAGAGACCTTGAATGCCAACCAAGCCCCCAcccc             >  7:70437/1‑149 (MQ=38)                                                                                                                                                tttGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCaa  >  6:153159/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GCTTGAAGCCCACCAGCAGGCACCCTAAGGCGGCTACTGCGTACAAGCCCCAGGCGAAGGTGTAGTCGTTCTCGGTCATGGTGTTCGTGCAAGCCAGGCAAAGAGATGCCTATGATAAAC‑ACTTTTCCGGGCGCAGACAGTGTTTGCCTGTGCCGGCCTCTTCGC‑GGGTAAACCCGCTCCTACCTCGGTGCGATCCCTGTTGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGGCAACTCCAATCAAGAGACCTTCAATGCCAACCAAGCCCCAACCCCCGATTGCCCAA  >  NC_002947/5201436‑5201726

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.