New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5390374 =	43 (0.880)	3 (0.060)	3/256	NT	7.0%	intergenic (+463/‑259)	PP_4738/PP_mr56	hypothetical protein/C4 ncRNA
	?	NC_002947	5390410 =	38 (0.800)					intergenic (+499/‑223)	PP_4738/PP_mr56	hypothetical protein/C4 ncRNA

ATTGTCATACAGAACAGGATCGTCGCGTAGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACT  >  NC_002947/5390226‑5390522                                                                                                                                                     |                                                                                                                                                     tgaaaaaatgaccgcaacggaaaacaggcgcaggcagtatctttgggaaacgccctacaagaaaggggttaaatccgatttttcgacccgcagcgcccaaattccaggcacaaaaaaagacgcccgagggcgtcttcttctttggattt                                                                                                                                                      <  5:145474‑M1/1‑1 (MQ=255) tgaaaaaatgaccgcaacggaaaacaggcgcaggcagtatcattgggaaacgccctacaagaaaggggttaaatccgatttttcgacccgcagcgcccaaattccaggcacaaaaaaagacgcccgagggcgtcttcttctttggattt                                                                                                                                                      <  6:277427‑M1/1‑1 (MQ=255)   aaaaaatgaccgcaacggaaaacaggcgcaggcagtatctttgggaaacgccctacaagaaaggggttaaatccgatttttcgacccgcagcgcccaaattccaggcacaaaaaaagacgcccgagggcgtcttcttctttggattTg                                                                                                                                                     >  3:185409‑M1/147‑148 (MQ=255)          cAGAACAGGATCGTCGCGTAGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACgg                                                                                                                                             <  5:215521/149‑1 (MQ=255)          cAGAACAGGATCGTCGCGTAGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACgg                                                                                                                                             <  4:84574/149‑1 (MQ=255)             aaCAGGATCGTCGCGTAGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACggggg                                                                                                                                          >  8:124045/1‑149 (MQ=255)             aaCAGGATCGTCGCGTAGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACggggg                                                                                                                                          >  7:267977/1‑149 (MQ=255)              aCAGGATCGTCGCGTAGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGt                                                                                                                                         <  5:69790/149‑1 (MQ=255)                aacggaaaacaggcgcaggcagtatctttgggaaacgccctacaagaaaggggttaaatccgatttttcgacccgcagcgcccaaattccaggcacaaaaaaagacgcccgagggcgtcttcttctttggattTgg                                                                                                                                                    >  3:203056‑M1/134‑136 (MQ=255)                aacggaaaacaggcgcaggcagtatctttgggaaacgccctacaagaaaggggttaaatccgatttttcgacccgcagcgcccaaattccaggcacaaaaaaagacgcccgagggcgtcttcttctttggattTgg                                                                                                                                                    <  4:203056‑M1/3‑1 (MQ=255)                          cgTAGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCAGGCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATcccccc                                                                                                                             <  8:278637/149‑1 (MQ=255)                             aGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTc                                                                                                                                       >  7:244322/1‑136 (MQ=255)                             aGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTc                                                                                                                                       <  8:244322/136‑1 (MQ=255)                              gCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCt                                                                                                                         >  2:4700/1‑149 (MQ=255)                                            tgggaaacgccctacaagaaaggggttaaatccgatttttcgacccgcagcgcccaaattccaggcacaaaaaaagacgcccgagggcgtcttcttctttggattTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCaa                                                                                                            >  1:52712‑M1/106‑148 (MQ=255)                                            aaGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCaaa                                                                                                           <  5:247094/149‑1 (MQ=255)                                            aaGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCa                                                                                                             >  2:250822/1‑147 (MQ=255)                                             gggaaacgccctacaagaaaggggttaaatccgatttttcgacccgcagcgcccaaattccaggcacaaaaaaagacgcccgagggcgtcttcttctttggattTGGCGGACGGGGGTTCAAATCCCCCCGGCTccacca                                                                                                                   >  3:181635‑M1/105‑140 (MQ=255)                                             gggaaacgccctacaagaaaggggttaaatccgatttttcgacccgcagcgcccaaattccaggcacaaaaaaagacgcccgagggcgtcttcttctttggattTGGCGGACGGGGGTTCAAATCCCCCCGGCTccacca                                                                                                                   <  4:181635‑M1/36‑1 (MQ=255)                                             aGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTCCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCaaa                                                                                                           <  1:250822/148‑1 (MQ=255)                                                     aaaCTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAagaagaaga                                                                                                   <  5:234473/148‑1 (MQ=255)                                                     aaaCTTACACAACTCAACCAAAGCACCCTGCCCGACGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAACCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAAACCAAAGAACAAGAc                                                                                                  >  4:288830/1‑149 (MQ=255)                                                               aaCTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGc                                                                                        >  1:284024/1‑149 (MQ=255)                                                                  tCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTc                                                                                     >  5:277427/1‑149 (MQ=255)                                                                  tCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTc                                                                                     >  6:145474/1‑149 (MQ=255)                                                                      ccAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCCCCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCtttt                                                                                 >  8:18783/1‑149 (MQ=255)                                                                      ccAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCtttt                                                                                 >  3:164686/1‑149 (MQ=255)                                                                        aaaGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCtttttt                                                                               >  4:11861/1‑149 (MQ=255)                                                                           gCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTtgt                                                                            <  7:198179/149‑1 (MQ=255)                                                                           gCACCCTGCCCGGCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTtgt                                                                            <  4:135112/149‑1 (MQ=255)                                                                               ccTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCt                                                                        <  3:11861/149‑1 (MQ=255)                                                                                cTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTg                                                                       <  8:267977/149‑1 (MQ=255)                                                                                cTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTg                                                                       <  2:284024/149‑1 (MQ=255)                                                                                          ggcggcTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGgc                                                             <  7:124045/149‑1 (MQ=255)                                                                                                tGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGCCGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCGTTTTTTGTGCCTGGAATTTGGGCGCTGCg                                                       >  6:297677/1‑149 (MQ=255)                                                                                                       tAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGGCTGGAATTTGGGCGCTGCGGGTCGa                                                 >  2:182358/1‑148 (MQ=255)                                                                                                        aaaTCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCGCCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCGTGGAATTTGGGCGGTGCGGGTCGaa                                                >  6:172149/1‑148 (MQ=255)                                                                                                            cAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATc                                           >  8:53848/1‑149 (MQ=255)                                                                                                              gTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCgg                                         <  7:53848/149‑1 (MQ=255)                                                                                                               tAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGa                                        <  1:4700/149‑1 (MQ=255)                                                                                                                  acacGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGgcg                                                            <  5:10348/126‑1 (MQ=255)                                                                                                                  acacGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGgcg                                                            >  6:10348/1‑126 (MQ=255)                                                                                                                  acacGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGt                                                    >  6:239429/1‑134 (MQ=255)                                                                                                                  acacGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGt                                                    <  5:239429/134‑1 (MQ=255)                                                                                                                    acGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTaa                                   >  7:203766/1‑149 (MQ=255)                                                                                                                     cGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAAc                                  <  7:207202/149‑1 (MQ=255)                                                                                                                        cTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAAcccc                               >  2:162190/1‑149 (MQ=255)                                                                                                                         tAAGCATGTAGTACCGACAGCGTAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCt                              >  5:239590/1‑149 (MQ=255)                                                                                                                                gtagtaCCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTAGTGCCTGGAATTAGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCATTTCTTg                        >  2:104484/1‑148 (MQ=255)                                                                                                                                gtagtaCCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCACGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCGGCGGGTCGAAAAATCGGATTTAAACCCATTCTTg                        >  7:120822/1‑148 (MQ=255)                                                                                                                                          cAGCGTAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTc             <  6:239590/149‑1 (MQ=255)                                                                                                                                                     TGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGaa                                                <  8:209995‑M1/103‑1 (MQ=255)                                                                                                                                                     TGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCttt                            <  5:254246‑M1/123‑1 (MQ=255)                                                                                                                                                     TGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCttt                            >  6:254246‑M1/1‑123 (MQ=255)                                                                                                                                                     TGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCCGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACt  <  6:101404‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     ATTGTCATACAGAACAGGATCGTCGCGTAGCACGTTGTGGGCGAAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACT  >  NC_002947/5390226‑5390522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.