New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5390374 =	43 (0.880)	3 (0.060)	3/256	NT	7.0%	intergenic (+463/‑259)	PP_4738/PP_mr56	hypothetical protein/C4 ncRNA
	?	NC_002947	5390410 =	38 (0.800)					intergenic (+499/‑223)	PP_4738/PP_mr56	hypothetical protein/C4 ncRNA

AAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCA  >  NC_002947/5390269‑5390557                                                                                                                                              |                                                                                                                                                    tgggaaacgccctacaagaaaggggttaaatccgatttttcgacccgcagcgcccaaattccaggcacaaaaaaagacgcccgagggcgtcttcttctttggattTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCaa                                                                                                                                               >  1:52712‑M1/106‑148 (MQ=255) aaGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCaaa                                                                                                                                              <  5:247094/149‑1 (MQ=255) aaGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCa                                                                                                                                                >  2:250822/1‑147 (MQ=255)  aGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTCCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCaaa                                                                                                                                              <  1:250822/148‑1 (MQ=255)          aaaCTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAagaagaaga                                                                                                                                      <  5:234473/148‑1 (MQ=255)          aaaCTTACACAACTCAACCAAAGCACCCTGCCCGACGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAACCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAAACCAAAGAACAAGAc                                                                                                                                     >  4:288830/1‑149 (MQ=255)                    aaCTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGc                                                                                                                           >  1:284024/1‑149 (MQ=255)                       tCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTc                                                                                                                        >  5:277427/1‑149 (MQ=255)                       tCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTc                                                                                                                        >  6:145474/1‑149 (MQ=255)                           ccAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCCCCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCtttt                                                                                                                    >  8:18783/1‑149 (MQ=255)                           ccAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCtttt                                                                                                                    >  3:164686/1‑149 (MQ=255)                             aaaGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCtttttt                                                                                                                  >  4:11861/1‑149 (MQ=255)                                gCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTtgt                                                                                                               <  7:198179/149‑1 (MQ=255)                                gCACCCTGCCCGGCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTtgt                                                                                                               <  4:135112/149‑1 (MQ=255)                                    ccTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCt                                                                                                           <  3:11861/149‑1 (MQ=255)                                     cTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTg                                                                                                          <  2:284024/149‑1 (MQ=255)                                     cTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTg                                                                                                          <  8:267977/149‑1 (MQ=255)                                               ggcggcTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGgc                                                                                                <  7:124045/149‑1 (MQ=255)                                                     tGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGCCGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCGTTTTTTGTGCCTGGAATTTGGGCGCTGCg                                                                                          >  6:297677/1‑149 (MQ=255)                                                            tAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGGCTGGAATTTGGGCGCTGCGGGTCGa                                                                                    >  2:182358/1‑148 (MQ=255)                                                             aaaTCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCGCCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCGTGGAATTTGGGCGGTGCGGGTCGaa                                                                                   >  6:172149/1‑148 (MQ=255)                                                                 cAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATc                                                                              >  8:53848/1‑149 (MQ=255)                                                                   gTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCgg                                                                            <  7:53848/149‑1 (MQ=255)                                                                    tAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGa                                                                           <  1:4700/149‑1 (MQ=255)                                                                       acacGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGgcg                                                                                               <  5:10348/126‑1 (MQ=255)                                                                       acacGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGgcg                                                                                               >  6:10348/1‑126 (MQ=255)                                                                       acacGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGt                                                                                       <  5:239429/134‑1 (MQ=255)                                                                       acacGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGt                                                                                       >  6:239429/1‑134 (MQ=255)                                                                         acGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTaa                                                                      >  7:203766/1‑149 (MQ=255)                                                                          cGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAAc                                                                     <  7:207202/149‑1 (MQ=255)                                                                             cTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAAcccc                                                                  >  2:162190/1‑149 (MQ=255)                                                                              tAAGCATGTAGTACCGACAGCGTAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCt                                                                 >  5:239590/1‑149 (MQ=255)                                                                                     gtagtaCCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTAGTGCCTGGAATTAGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCATTTCTTg                                                           >  2:104484/1‑148 (MQ=255)                                                                                     gtagtaCCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCACGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCGGCGGGTCGAAAAATCGGATTTAAACCCATTCTTg                                                           >  7:120822/1‑148 (MQ=255)                                                                                               cAGCGTAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTc                                                <  6:239590/149‑1 (MQ=255)                                                                                                   ttggatttggtggagccggggggatttgaacccccgtccgccaAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCa                                             >  1:52712‑M2/44‑148 (MQ=255)                                                                                                          tggtggagccggggggatttgaacccccgtccgccaAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTccc                                              <  4:181635‑M2/104‑1 (MQ=255)                                                                                                          tggtggagccggggggatttgaacccccgtccgccaAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTccc                                              >  3:181635‑M2/37‑140 (MQ=255)                                                                                                          TGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGaa                                                                                   <  8:209995‑M1/103‑1 (MQ=255)                                                                                                          TGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCttt                                                               <  5:254246‑M1/123‑1 (MQ=255)                                                                                                          TGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCttt                                                               >  6:254246‑M1/1‑123 (MQ=255)                                                                                                          TGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCCGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACt                                     <  6:101404‑M1/149‑1 (MQ=255)                                                                                                                          aaaTCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACTGCCTGCGCCTGtttt                      <  1:162190/148‑1 (MQ=255)                                                                                                                          aaaTCCCCCCGGCTCCACCAAAACCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCAGGAATTTGGGCGCAGCGGGACGAAAAAAGGGAAATAACCCCTTAGATGAAGGCCGTTTCCCAAAGATACTCCCTGCGCCTGATTTc                     >  8:33954/1‑149 (MQ=255)                                                                                                                              ccccccGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCGTTGTTTGTGCCTGGAATTTGGGCGCTGCGGGTCCAAAAATCGGATTTAACCCCTTTCATGTAGGCCGTTTCCCAACGAGACAGCCTGCGCCTGTGTTCCgat                 >  8:243540/1‑147 (MQ=255)                                                                                                                               cccccGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGTTg                >  1:103657/1‑149 (MQ=255)                                                                                                                                          accaAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTGCCAAAGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCAttttt     >  4:107094/1‑149 (MQ=255)                                                                                                                                           ccaAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGtt                 >  3:203056‑M2/4‑136 (MQ=255)                                                                                                                                           ccaAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGtt                 <  4:203056‑M2/133‑1 (MQ=255)                                                                                                                                            caAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCAtttttt    >  3:185409‑M2/3‑148 (MQ=255)                                                                                                                                             aAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAATGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCa  <  6:277427‑M2/148‑1 (MQ=255)                                                                                                                                             aAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCa  <  5:145474‑M2/148‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                    AAGTGACTAAAACTTACACAACTCATCCAAAGCACCCTGCCCGTCGGGCGGCTGCGGATTAAATCAGTAGACACGGCTAAGCATGTAGTACCGACAGCGGAGTACTGGCGGACGGGGGTTCAAATCCCCCCGGCTCCACCAAATCCAAAGAAGAAGACGCCCTCGGGCGTCTTTTTTTGTGCCTGGAATTTGGGCGCTGCGGGTCGAAAAATCGGATTTAACCCCTTTCTTGTAGGGCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCA  >  NC_002947/5390269‑5390557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.