New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5671615 =	39 (0.800)	4 (0.100)	4/214	NT	12.2%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5671700 =	26 (0.650)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein

CCACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCAC  >  NC_002947/5671467‑5671757                                                                                                                                                       |                                                                                                                                                ccaccgggAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCTGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGATGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCtt                                                                                                                                                 <  2:252861/143‑1 (MQ=255)  cACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTtg                                                                                                                                                >  7:292235/1‑149 (MQ=255)   aCGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTtgt                                                                                                                                               <  7:56684/149‑1 (MQ=255)       gtcgtcggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTgg                                                                                                                                             >  5:124720‑M1/145‑149 (MQ=255)       gtcgtcggttaccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTgg                                                                                                                                             >  1:288270‑M1/145‑149 (MQ=255)           cccGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCTAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCgg                                                                                                                                       >  4:9283/1‑149 (MQ=255)           cccGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCgg                                                                                                                                       >  5:88716/1‑149 (MQ=255)           cccGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCgg                                                                                                                                       <  2:306934/149‑1 (MQ=255)             cGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGc                                                                                                                                     <  6:278741/149‑1 (MQ=255)                  ccaggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTg                                                                                                                                  <  2:40661‑M1/16‑1 (MQ=255)                   gCTGCGTCAGGGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATGCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGccc                                                                                                                               <  2:257235/149‑1 (MQ=255)                     tGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGAGCCcgc                                                                                                                             >  7:169227/1‑149 (MQ=255)                     ggcgcaagcgttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGccc                                                                                                                               <  4:52621‑M1/19‑1 (MQ=255)                        gTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGTGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCACGCCcgctcc                                                                                                                          <  3:285542/149‑4 (MQ=255)                            gTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAagaga                                                                                                                      <  6:99783/149‑1 (MQ=255)                              gttcgcccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAaga                                                                                                                        <  5:305677‑M1/26‑1 (MQ=255)                                cTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCaa                                                                                                                  >  8:263949/1‑149 (MQ=255)                                    ccagagccaacgggctcaggcaaacgagcagcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattctcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAAcc                                                                                                                >  6:305677‑M1/116‑149 (MQ=255)                                       aTCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATc                                                                                                           <  8:292235/149‑1 (MQ=255)                                        tCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGGCCGCGGAGAGAGCAAACCCAtag                                                                                                          >  5:37348/1‑147 (MQ=255)                                          cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGGGAAGAGAGCAACCCGATCGtt                                                                                                        <  2:214630/149‑1 (MQ=255)                                          cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGCGCAACCCGATCGtt                                                                                                        <  7:263949/149‑1 (MQ=255)                                          cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGtt                                                                                                        <  3:17990/149‑1 (MQ=255)                                          cGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGtt                                                                                                        >  8:164437/1‑149 (MQ=255)                                           ggggCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTg                                                                                                       >  1:180445/1‑149 (MQ=255)                                                 aCGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCCGGCGTGCCCGCCAAGAGAGCAACCCGATCGTTGGCAACg                                                                                                 >  1:349/1‑149 (MQ=255)                                                              ggCGAGCGGCGCAAGGATATCGAGGCGCATCTGCGTGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGg‑tg                                                                                    >  1:40661/1‑149 (MQ=255)                                                              ggCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCGAAGCCGg‑tg                                                                                    <  7:58919/148‑1 (MQ=255)                                                                 agcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCggg                                                                                                                                      >  8:235699‑M1/87‑98 (MQ=255)                                                                 agcaggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCggg                                                                                                                                      <  7:235699‑M1/12‑1 (MQ=255)                                                                   gcggcgCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTcgcg                                                                              <  7:164437/149‑1 (MQ=255)                                                                   caggatccagaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTcg                                                                                <  8:240482‑M1/65‑1 (MQ=255)                                                                         cAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGTCAct                                                                        <  2:180445/149‑2 (MQ=255)                                                                          aaGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGGGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGc                                                                       <  3:63930/149‑1 (MQ=255)                                                                            ggATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTCCGCGG‑TCTTGTGGGAGCGGGCGTGCCCCCGAAGAGACCAACCCGAACGTTGGCACCCGCTTCGCCGG‑TGTTAGCGGGCACGccc                                                                     >  1:103166/1‑149 (MQ=255)                                                                            gaacagacgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGc                                                                       >  7:240482‑M1/76‑149 (MQ=255)                                                                                  acgggcgatatgtggcatggccggagattacgcgctcggccggtgtacggtaaaggcatgcattatcgaTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTc                                                                 >  6:300715‑M1/70‑149 (MQ=255)                                                                                                 tgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAat                                                    >  2:37623/1‑146 (MQ=255)                                                                                                 tgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAat                                                    <  1:37623/146‑1 (MQ=255)                                                                                                   ctaTCCACCCAAGCCTGATGTGCCCGAAAAACTCATTGTCTTGCGGGG‑TCTTGTGGGAGCGGGCGTGCCCGCTAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAatgcat                                                <  6:37348/146‑1 (MQ=255)                                                                                                   cGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCCTTGGCACCGGCTTCGCCGG‑TGTTAGCGGGCACCCCCGCTCCCACCTCGCTAatgcatg                                               >  8:71573/1‑149 (MQ=38)                                                                                                      tCCACCCAAGCCTGATGTGCCCGCATAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCCACCCGATCGTTGGCACCCGAGTCGCCGG‑TGTTAGCGGGCACGCCCGCGCCCACATCGATAATGCATGCCt                                            >  8:198608/1‑149 (MQ=38)                                                                                                         aCCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCt                                                                  >  6:289893/1‑124 (MQ=255)                                                                                                         aCCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCt                                                                  <  5:289893/124‑1 (MQ=255)                                                                                                                      ggccccGCAAAACGCATT‑TGTTGGGGGGTTTTTGTGGGCGGGGGGGTGCCGGCTAATAGACCACCCCTTTCTTGGCCACCGGGTT‑GCGGGTTGTGGGGGGGCACGCCGGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGc                             <  6:207895/145‑1 (MQ=255)                                                                                                                         cccGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGGCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAg                         >  1:86803/1‑149 (MQ=255)                                                                                                                         cccGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCCGCTTCGCCGG‑TGTTAGCGGGCACGCCCGCTCCCACATCGATAATGCCTGCCTTTACCGTACACccgccgcg                         >  2:5745/1‑147 (MQ=255)                                                                                                                                     aTTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGCGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTGCGCGGGCACGCCCGCTCCCACATCGATAATGCAGGCCTTTACCGTACACCGGCCGAGCGCGTAAtct               <  8:169227/147‑1 (MQ=255)                                                                                                                                     aTTGTCTTGCGCGG‑TCTGGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATc                                                          <  3:135430/104‑1 (MQ=255)                                                                                                                                         tCTTGCGCGG‑GCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGGTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGcc         <  7:198608/149‑1 (MQ=255)                                                                                                                                          cTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCCG‑TGTTCGCGGGCACGCCCGCGCCCCCATCGATAATGCAAGCCTTTACCGTTCACCGGCCGAGCGCGTAATCTCCGGCCa        >  3:40939/1‑149 (MQ=38)                                                                                                                                                cgG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCcac  <  2:103166/149‑1 (MQ=255)                                                                                                                                                cgG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCcac  <  6:88716/149‑1 (MQ=255)                                                                                                                                                       |                                                                                                                                                CCACGTGGAGCCCGAGCGGCTGCGTCAGTGCCTGCGCCATCCGGGGCTACGGCTATCGCTGGGCGAGCGGCGCAAGGATATCGAGGCGCATCTGC‑TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCAC  >  NC_002947/5671467‑5671757

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.