New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5671615 =	39 (0.800)	4 (0.100)	4/214	NT	12.2%	intergenic (+34/‑136)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein
	?	NC_002947	5671700 =	26 (0.650)					intergenic (+119/‑51)	PP_4978/PP_4979	hypothetical protein/substrate‑binding protein

TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGAC  >  NC_002947/5671562‑5671843                                                                                                                                             |                                                                                                                                                tgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAat                                                                                                                                          <  1:37623/146‑1 (MQ=255) tgcGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAat                                                                                                                                          >  2:37623/1‑146 (MQ=255)   ctaTCCACCCAAGCCTGATGTGCCCGAAAAACTCATTGTCTTGCGGGG‑TCTTGTGGGAGCGGGCGTGCCCGCTAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAatgcat                                                                                                                                      <  6:37348/146‑1 (MQ=255)   cGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCCTTGGCACCGGCTTCGCCGG‑TGTTAGCGGGCACCCCCGCTCCCACCTCGCTAatgcatg                                                                                                                                     >  8:71573/1‑149 (MQ=38)      tCCACCCAAGCCTGATGTGCCCGCATAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCCACCCGATCGTTGGCACCCGAGTCGCCGG‑TGTTAGCGGGCACGCCCGCGCCCACATCGATAATGCATGCCt                                                                                                                                  >  8:198608/1‑149 (MQ=38)                      ggccccGCAAAACGCATT‑TGTTGGGGGGTTTTTGTGGGCGGGGGGGTGCCGGCTAATAGACCACCCCTTTCTTGGCCACCGGGTT‑GCGGGTTGTGGGGGGGCACGCCGGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGc                                                                                                                   <  6:207895/145‑1 (MQ=255)                         cccGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGGCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAg                                                                                                               >  1:86803/1‑149 (MQ=255)                         cccGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCCGCTTCGCCGG‑TGTTAGCGGGCACGCCCGCTCCCACATCGATAATGCCTGCCTTTACCGTACACccgccgcg                                                                                                               >  2:5745/1‑147 (MQ=255)                                     aTTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGCGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTGCGCGGGCACGCCCGCTCCCACATCGATAATGCAGGCCTTTACCGTACACCGGCCGAGCGCGTAAtct                                                                                                     <  8:169227/147‑1 (MQ=255)                                     aTTGTCTTGCGCGG‑TCTGGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATc                                                                                                                                                <  3:135430/104‑1 (MQ=255)                                         tCTTGCGCGG‑GCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGGTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGcc                                                                                               <  7:198608/149‑1 (MQ=255)                                          cTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCCG‑TGTTCGCGGGCACGCCCGCGCCCCCATCGATAATGCAAGCCTTTACCGTTCACCGGCCGAGCGCGTAATCTCCGGCCa                                                                                              >  3:40939/1‑149 (MQ=38)                                                cgG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCcac                                                                                        <  2:103166/149‑1 (MQ=255)                                                cgG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCcac                                                                                        <  6:88716/149‑1 (MQ=255)                                                        GTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGc                                                                                 <  8:65498‑M1/149‑1 (MQ=255)                                                           GGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGccc                                                                               >  7:65498‑M1/1‑148 (MQ=255)                                                             gagcgggcgtgcccgcgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGt                                                                             >  6:300715‑M2/81‑149 (MQ=255)                                                               CGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTg                                                                          <  3:52621‑M1/149‑1 (MQ=255)                                                                GGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGt                                                                         <  5:50368‑M1/149‑1 (MQ=255)                                                                  GCGTGCCCGCGAAGAGAGCAACCCTATCGTTGGCACCGGCTTCGGCGT‑TGTTCGCGGGCACGGCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTc                                                                       >  2:349‑M1/1‑149 (MQ=255)                                                                   gcgtgcccgcgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTc                                                                       >  7:240482‑M2/75‑149 (MQ=255)                                                                        CCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATc                                                                                   <  3:46430‑M1/131‑1 (MQ=255)                                                                        CCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATc                                                                                   >  4:46430‑M1/1‑131 (MQ=255)                                                                        CCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATc                                                                 <  1:50478‑M1/149‑1 (MQ=255)                                                                            cgaacaccggcgaagccggtgccaacgatcgggttgctctcttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctg                                                              <  8:240482‑M2/84‑1 (MQ=255)                                                                              AGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctgctg                                                           >  2:86803‑M1/1‑149 (MQ=255)                                                                                     aaCCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCTGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGttt                                                    <  4:40939/149‑1 (MQ=255)                                                                                     aaCCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTg                                                                          >  1:34616/1‑127 (MQ=255)                                                                                     aaCCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTg                                                                          <  2:34616/127‑1 (MQ=255)                                                                                      aCCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGttcg                                                   >  4:232241/1‑147 (MQ=255)                                                                                      aCCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTg                                                   <  1:5745/149‑1 (MQ=255)                                                                                       cccGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGa                                                                   <  6:256832/132‑1 (MQ=255)                                                                                       cccGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGa                                                                   >  5:256832/1‑132 (MQ=255)                                                                                             cGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTGTCCCGTACCCCGGCCGAGCGCGTAAGATCCGGCCCTGCCACATATCGCCCGTCTGTGCTGGATCCTGCTGCGCGTTTGCCTGAGc                                            >  7:282977/1‑149 (MQ=38)                                                                                              gcgaacACCGGCGAAGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGcc                                           >  1:134022/6‑149 (MQ=255)                                                                                                  gCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGtt                                       <  6:50368/149‑1 (MQ=255)                                                                                                   cACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTg                                      <  2:50478/149‑1 (MQ=255)                                                                                                     ccGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGcgcg                                                                                                           <  8:206762/78‑1 (MQ=255)                                                                                                     ccGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGcgcg                                                                                                           >  7:206762/1‑78 (MQ=255)                                                                                                           ggttgctctcttcgcgggcacgcccgctcccacaTCGAGAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTgg                               >  6:305677‑M2/35‑149 (MQ=255)                                                                                                                   tcttcgcgggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAAc                         <  5:305677‑M2/121‑1 (MQ=255)                                                                                                                          gggcacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGcc                <  4:52621‑M2/130‑1 (MQ=255)                                                                                                                             cacgcccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTgg             <  2:40661‑M2/133‑1 (MQ=255)                                                                                                                                 cccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctgct                                                            <  7:235699‑M2/86‑1 (MQ=255)                                                                                                                                 cccgctcccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCctgct                                                            >  8:235699‑M2/13‑98 (MQ=255)                                                                                                                                        ccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCgacgac  >  5:124720‑M2/6‑149 (MQ=255)                                                                                                                                        ccacaTCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCgacgac  >  1:288270‑M2/6‑149 (MQ=255)                                                                                                                                             |                                                                                                                                                TGCGATCCACCCAAGCCTGATGTGCCCGCAAAACTCATTGTCTTGCGCGG‑TCTTGTGGGAGCGGGCGTGCCCGCGAAGAGAGCAACCCGATCGTTGGCACCGGCTTCGCCGG‑TGTTCGCGGGCACGCCCGCTCCCACATCGATAATGCATGCCTTTACCGTACACCGGCCGAGCGCGTAATCTCCGGCCATGCCACATATCGCCCGTCTGTTCTGGATCCTGCTGCTCGTTTGCCTGAGCCCGTTGGCTCTGGGCGAACGCTTGCGCCTGGTAACCGACGAC  >  NC_002947/5671562‑5671843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.