New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5688301 =	67 (1.370)	4 (0.090)	4/252	NT	6.3%	coding (665/2061 nt)	pilJ	twitching motility protein PilJ
	?	NC_002947	5688340 =	54 (1.150)					coding (626/2061 nt)	pilJ	twitching motility protein PilJ

TTTCGAGGATTTCATCCACCGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCG  >  NC_002947/5688155‑5688441                                                                                                                                                   |                                                                                                                                             ctgcaggtggaatacgaaaaagtggtcgagatcctgctgcagagcggtgccccggccaatcaggttgcggtggcccagcgccagctgttgctggcggaacgcatccttggctcggtcaacaccgtgctggccggtgacgacagcgccgc                                                                                                                                            <  4:29178‑M1/3‑1 (MQ=255)   gcaggtggaatacgaaaaagtggtcgagatcctgctgcagagcggtgccccggccaatcaggttgcggtggcccagcgccagctgttgctggccgaacgcatccttggctcggtcaacaccgtgctggccggtgacgacagcgccgcc                                                                                                                                           <  1:183333‑M1/4‑1 (MQ=255)    cttggAGTTCATCCAACGAACCGGCAACGAACTGGAACAACTAGTCGATTTCGGCCAGCCGCGCACTCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGccc                                                                                                                                          <  8:285727/145‑1 (MQ=255)    caggtggaatacgaaaaagtggtcgagatcctgctgcagagcggtgccccggccaatcaggttgcggtggcccagcgccagctgttgctggccgaacgcatccttggctcggtcaacaccgtgctggccggtgacgacagcgcCGccc                                                                                                                                          >  7:26164‑M1/144‑148 (MQ=255)     gAGGATTTCATCCACCGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCgg                                                                                                                                        >  3:16182/1‑149 (MQ=255)        gATTTCATCCACCGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCg                                                                                                                                         <  5:118707/145‑1 (MQ=255)        gATTTCATCCACCGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCg                                                                                                                                         >  6:118707/1‑145 (MQ=255)              aTCCACCGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGc                                                                                                                               <  3:250845/149‑1 (MQ=255)              aTCCACCGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGc                                                                                                                               >  3:246494/1‑149 (MQ=255)                 cACCGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCg                                                                                                                             >  7:270351/1‑148 (MQ=255)                   ccGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAg                                                                                                                          <  6:91183/149‑1 (MQ=255)                   ccGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAg                                                                                                                          >  5:91183/1‑149 (MQ=255)                      aaCCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCg                                                                                                                       <  8:270351/149‑1 (MQ=255)                          ggCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCgg                                                                                                                   <  2:198083/149‑1 (MQ=255)                           cgagatcctgctgcagagcggtgccccggccaatcaggttgcggtggcccagcgccagctgttgctggccgaacgcatccttggctcggtcaacaccgtgctggccggtgacgacagcgcCGCCCGGCGTCACGGCCGAAGGCGTCGgc                                                                                                                  <  2:157521‑M1/29‑1 (MQ=255)                               cGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGcc                                                                                                                              <  5:123717/133‑1 (MQ=255)                               cGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTCTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGcc                                                                                                                              >  6:123717/1‑133 (MQ=255)                                  aCTGGAACAACTCGGCGATTTCGGCCAGGCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTgg                                                                                                           >  1:172586/1‑149 (MQ=255)                                   cTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTggg                                                                                                          <  5:161203/149‑1 (MQ=255)                                    tGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggc                                                                                                         >  4:207756/1‑149 (MQ=255)                                     ctgcagagcggtgccccggccaatcaggttgcggtggcccagcgccagctgttgctggccgaacgcatccttggctcggtcaacaccgtgctggccggtgacgacagcgcCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggcg                                                                                                        >  6:2360‑M1/111‑149 (MQ=255)                                     ctgcagagcggtgccccggccaatcaggttgcggtggcccagcgccagctgttgctggccgaacgcatccttggctcggtcaacaccgtgctggccggtgacgacagcgcCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggcg                                                                                                        <  5:2360‑M1/39‑1 (MQ=255)                                      gAACAACTCGGCGATTTCGGCCAGGCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggcgg                                                                                                       <  2:172586/149‑1 (MQ=255)                                      gAACAACTCGGCGAGTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGTCGCGGGGGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggcg                                                                                                        <  6:305671/148‑1 (MQ=255)                                       aacaacTCGGCGATTTCGGCCAGCCGCGCACGCGCGGCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggcggc                                                                                                      <  3:282257/149‑1 (MQ=255)                                        cagagcggtgccccggccaatcaggttgcggtggcccagcgccagctgttgctggccgaacgcatccttggctcggtcaacaccgtgctggccggtgacgacagcgcCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggcggc                                                                                                      >  1:157521‑M1/108‑148 (MQ=255)                                        acaacTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGgcggcg                                                                                                     >  5:223/1‑149 (MQ=255)                                             tCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTgtc                                                                                                >  6:181716/1‑149 (MQ=255)                                               ggCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTgtcgt                                                                                              >  8:223785/1‑149 (MQ=255)                                                gCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTgtcgt                                                                                              >  5:294096/1‑148 (MQ=255)                                                       cGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGc                                                                                       <  2:291144/148‑1 (MQ=255)                                                          ccAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCaat                                                                                   >  2:19861/1‑147 (MQ=255)                                                            aGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAc                                                                                 <  6:223/149‑1 (MQ=255)                                                                gcgcACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGgtg                                                                             >  2:36056/1‑149 (MQ=255)                                                                      gcgcgTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGAcc                                                                       >  6:19992/1‑149 (MQ=255)                                                                        gcgTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGa                                                                     >  3:301269/1‑149 (MQ=255)                                                                          gTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGc                                                                   >  3:168855/1‑149 (MQ=255)                                                                             ggCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGc                                                                                                                                       <  2:18284/78‑1 (MQ=255)                                                                             ggCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGc                                                                                                                                       >  1:18284/1‑78 (MQ=255)                                                                             ggCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCaa                                                                <  6:294096/149‑1 (MQ=255)                                                                              gCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAg                                                               <  1:241097/149‑1 (MQ=255)                                                                                gTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGa                                                             >  1:232568/1‑149 (MQ=255)                                                                                   cTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGc                                                          <  3:207756/149‑1 (MQ=255)                                                                                      gACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGtt                                                       <  4:185741/149‑1 (MQ=255)                                                                                        cgcgGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCg                                                     <  4:301269/149‑1 (MQ=255)                                                                                        cgcgGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCg                                                     <  2:232568/149‑1 (MQ=255)                                                                                         gcgGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCg                                                     <  5:181716/148‑1 (MQ=255)                                                                                             gTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGAt                                                            <  4:103940/137‑1 (MQ=255)                                                                                             gTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGAt                                                            >  3:103940/1‑137 (MQ=255)                                                                                                aCCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCaa                                             >  7:179015/1‑149 (MQ=255)                                                                                                     gATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCTGCGTCACGGCCGAAGGCGTCGGCAGCCTTGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCt                                        <  5:71499/149‑1 (MQ=255)                                                                                                       ttGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTgg                                      <  1:36056/149‑1 (MQ=255)                                                                                                             cATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGAt                                                            >  5:24932/1‑121 (MQ=255)                                                                                                             cATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGAt                                                            <  6:24932/121‑1 (MQ=255)                                                                                                             cATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTgg                                <  6:135589/149‑1 (MQ=255)                                                                                                             cATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTgg                                <  8:179015/149‑1 (MQ=255)                                                                                                                        aTCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAAc                     >  4:199850/1‑149 (MQ=255)                                                                                                                         tCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGc                              >  8:273286/1‑139 (MQ=255)                                                                                                                         tCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGc                              <  7:273286/139‑1 (MQ=255)                                                                                                                            tGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGa                 <  5:19992/149‑1 (MQ=255)                                                                                                                             gCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAt                >  8:73125/1‑149 (MQ=255)                                                                                                                              cccTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACATCTGGCGCTGGGCCACCGCAACCTGAtt               <  6:92453/149‑1 (MQ=255)                                                                                                                              cccTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAtt               >  6:999/1‑149 (MQ=255)                                                                                                                              cccTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAtt               >  7:4895/1‑149 (MQ=255)                                                                                                                               ccTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCTGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTg              >  1:99595/1‑149 (MQ=255)                                                                                                                                 tCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGc            >  3:295307/1‑149 (MQ=255)                                                                                                                                    aGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCgg         <  2:99595/149‑1 (MQ=255)                                                                                                                                    aGCACATGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAt                >  3:46938/1‑142 (MQ=255)                                                                                                                                    aGCACATGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAt                <  4:46938/142‑1 (MQ=255)                                                                                                                                        ccTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCa     <  7:73125/149‑1 (MQ=255)                                                                                                                                         cTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAgg                                                              >  3:259329/1‑91 (MQ=255)                                                                                                                                         cTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAgg                                                              <  4:259329/91‑1 (MQ=255)                                                                                                                                         cTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGGCACCGCAACCTGATTGGCCGGGGCAc    >  2:89131/1‑149 (MQ=255)                                                                                                                                         cTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCAc    <  4:246494/149‑1 (MQ=255)                                                                                                                                            gCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGGCACCGCAACCTGATTGGCCGGGGCACCg  <  1:89131/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                             TTTCGAGGATTTCATCCACCGAACCGGCAACGAACTGGAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCACGGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCG  >  NC_002947/5688155‑5688441

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.