New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5688301 =	67 (1.370)	4 (0.090)	4/252	NT	6.3%	coding (665/2061 nt)	pilJ	twitching motility protein PilJ
	?	NC_002947	5688340 =	54 (1.150)					coding (626/2061 nt)	pilJ	twitching motility protein PilJ

GAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCGACCACTTTTTCGTATTCCACCTGCAG  >  NC_002947/5688192‑5688485                                                                                                                                                     |                                                                                                                                                   gAACAACTCGGCGATTTCGGCCAGGCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggcgg                                                                                                                                                    <  2:172586/149‑1 (MQ=255)  aacaacTCGGCGATTTCGGCCAGCCGCGCACGCGCGGCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggcggc                                                                                                                                                   <  3:282257/149‑1 (MQ=255)   cagagcggtgccccggccaatcaggttgcggtggcccagcgccagctgttgctggccgaacgcatccttggctcggtcaacaccgtgctggccggtgacgacagcgcCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGggcggc                                                                                                                                                   >  1:157521‑M1/108‑148 (MQ=255)   acaacTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGgcggcg                                                                                                                                                  >  5:223/1‑149 (MQ=255)        tCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTgtc                                                                                                                                             >  6:181716/1‑149 (MQ=255)          ggCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTgtcgt                                                                                                                                           >  8:223785/1‑149 (MQ=255)           gCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTgtcgt                                                                                                                                           >  5:294096/1‑148 (MQ=255)                  cGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGc                                                                                                                                    <  2:291144/148‑1 (MQ=255)                     ccAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCaat                                                                                                                                >  2:19861/1‑147 (MQ=255)                       aGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAc                                                                                                                              <  6:223/149‑1 (MQ=255)                           gcgcACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑Ggtg                                                                                                                         >  2:36056/1‑149 (MQ=255)                                 gcgcgTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGAcc                                                                                                                   >  6:19992/1‑149 (MQ=255)                                   gcgTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGa                                                                                                                 >  3:301269/1‑149 (MQ=255)                                     gTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGc                                                                                                               >  3:168855/1‑149 (MQ=255)                                        ggCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCaa                                                                                                            <  6:294096/149‑1 (MQ=255)                                         gCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAg                                                                                                           <  1:241097/149‑1 (MQ=255)                                           gTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGa                                                                                                         >  1:232568/1‑149 (MQ=255)                                              cTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGc                                                                                                      <  3:207756/149‑1 (MQ=255)                                                 gACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGtt                                                                                                   <  4:185741/149‑1 (MQ=255)                                                   cgcgGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCg                                                                                                 <  4:301269/149‑1 (MQ=255)                                                   cgcgGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCg                                                                                                 <  2:232568/149‑1 (MQ=255)                                                    gcgGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCg                                                                                                 <  5:181716/148‑1 (MQ=255)                                                        gTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGAt                                                                                                        >  3:103940/1‑137 (MQ=255)                                                        gTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGAt                                                                                                        <  4:103940/137‑1 (MQ=255)                                                           aCCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCaa                                                                                         >  7:179015/1‑149 (MQ=255)                                                                gATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCTGCGTCACGGCCGAAGGCGTCGGCAGCCTTGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCt                                                                                    <  5:71499/149‑1 (MQ=255)                                                                  ttGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTgg                                                                                  <  1:36056/149‑1 (MQ=255)                                                                        cATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGAt                                                                                                        >  5:24932/1‑121 (MQ=255)                                                                        cATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGAt                                                                                                        <  6:24932/121‑1 (MQ=255)                                                                        cATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTgg                                                                            <  8:179015/149‑1 (MQ=255)                                                                        cATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTgg                                                                            <  6:135589/149‑1 (MQ=255)                                                                                   aTCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAAc                                                                 >  4:199850/1‑149 (MQ=255)                                                                                    tCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGc                                                                          <  7:273286/139‑1 (MQ=255)                                                                                    tCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGc                                                                          >  8:273286/1‑139 (MQ=255)                                                                                       tGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGa                                                             <  5:19992/149‑1 (MQ=255)                                                                                        gCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAt                                                            >  8:73125/1‑149 (MQ=255)                                                                                         cccTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACATCTGGCGCTGGGCCACCGCAACCTGAtt                                                           <  6:92453/149‑1 (MQ=255)                                                                                         cccTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAtt                                                           >  7:4895/1‑149 (MQ=255)                                                                                         cccTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAtt                                                           >  6:999/1‑149 (MQ=255)                                                                                          ccTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCTGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTg                                                          >  1:99595/1‑149 (MQ=255)                                                                                            tCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGc                                                        >  3:295307/1‑149 (MQ=255)                                                                                               aGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCgg                                                     <  2:99595/149‑1 (MQ=255)                                                                                               aGCACATGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAt                                                            <  4:46938/142‑1 (MQ=255)                                                                                               aGCACATGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGAt                                                            >  3:46938/1‑142 (MQ=255)                                                                                                   ccTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCa                                                 <  7:73125/149‑1 (MQ=255)                                                                                                    cTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAgg                                                                                                          <  4:259329/91‑1 (MQ=255)                                                                                                    cTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAgg                                                                                                          >  3:259329/1‑91 (MQ=255)                                                                                                    cTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGGCACCGCAACCTGATTGGCCGGGGCAc                                                >  2:89131/1‑149 (MQ=255)                                                                                                    cTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCAc                                                <  4:246494/149‑1 (MQ=255)                                                                                                       gCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGGCACCGCAACCTGATTGGCCGGGGCACCg                                              <  1:89131/148‑1 (MQ=255)                                                                                                            gccgcccaggcggccgacgccttcggccgtgacgccgggcgGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTg                                         >  1:157521‑M2/42‑148 (MQ=255)                                                                                                              cgcccaggcggccgacgccttcggccgtgacgccgggcgGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTgcag                                      >  6:2360‑M2/40‑149 (MQ=255)                                                                                                              cgcccaggcggccgacgccttcggccgtgacgccgggcgGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTgcag                                      <  5:2360‑M2/110‑1 (MQ=255)                                                                                                                        gccgacgccttcggccgtgacgccgggcgGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCg                            <  2:157521‑M2/120‑1 (MQ=255)                                                                                                                         gcGGCCGACGCCTTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCGa                           >  2:183333/2‑149 (MQ=255)                                                                                                                           ggCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTgcagca                                    <  1:44030/138‑1 (MQ=255)                                                                                                                           ggCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTgcagca                                    >  2:44030/1‑138 (MQ=255)                                                                                                                              cGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCGACCACt                      <  7:223785/149‑1 (MQ=255)                                                                                                                              cGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCGACCACt                      >  7:77377/1‑149 (MQ=255)                                                                                                                                   gCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCGACCACTTTTTc                 <  3:199850/149‑1 (MQ=255)                                                                                                                                          ccgccTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTg                                         >  7:17898/1‑118 (MQ=255)                                                                                                                                          ccgccTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTg                                         <  8:17898/118‑1 (MQ=255)                                                                                                                                                gggcgGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCGACCACTTTTTCGTATTCCACCTg     >  7:26164‑M2/6‑148 (MQ=255)                                                                                                                                                gggCGGCGCTGTCGTCACCGGCCAGCACGGGTGTTGACCGCGCCAAGGATGCGTTCGGCCAGCACCAGATGGCGGTGGGCCACCGCACCCTGATTGGCGGGGGCACCGCTCTGCAGCAGGAGCTCGCCCACTTTTTCGTATTCCACATg     >  1:26790/1‑149 (MQ=255)                                                                                                                                                 ggcgGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCGACCACTTTTTCGTATTCCACCTGc    <  1:183333‑M2/144‑1 (MQ=255)                                                                                                                                                  gcgGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCCGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCGACCACTTTTTCGTATTCCACCTGCAg  <  4:29178‑M2/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GAACAACTCGGCGATTTCGGCCAGCCGCGCACGCGCGTCGGCGTCCTCGACGCGGGTGACCTGGATTGTCGCATTGCCATTGATCATGCCCTCCAGCACCTGGCCAAAGCGCCCGGCGTCACGGCCGAAGGCGTCGGCCGCCTGGGCGGCGCTGTCGTCACCGGCCAGCAC‑GGTGTTGACCGAGCCAAGGATGCGTTCGGCCAGCAACAGCTGGCGCTGGGCCACCGCAACCTGATTGGCCGGGGCACCGCTCTGCAGCAGGATCTCGACCACTTTTTCGTATTCCACCTGCAG  >  NC_002947/5688192‑5688485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.