New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6152833 =	39 (0.800)	4 (0.090)	4/246	NT	10.9%	coding (414/489 nt)	PP_5738	hypothetical protein
	?	NC_002947	6152875 =	29 (0.630)					coding (456/489 nt)	PP_5738	hypothetical protein

CGTCGACTCTCACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCC  >  NC_002947/6152686‑6152973                                                                                                                                                    |                                                                                                                                             tcaaagatgtgctgacgcggttgccgacacagcgggccagtgagatcgggcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaagggtgacaTg                                                                                                                                             <  4:62322‑M1/2‑1 (MQ=255) tcaaagatgtgctgacgcggttgccgacacagcgggccagtgagatcgggcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaagggtgacaTg                                                                                                                                             <  5:213993‑M1/2‑1 (MQ=255)  gtcgACTCTCACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGc                                                                                                                                            <  2:209571/149‑1 (MQ=255)  caaagatgtgctgacgcggttgccgacacagcgggccagtgagatcgggcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaagggtgacaTGc                                                                                                                                            <  2:13247‑M1/3‑1 (MQ=255)   tcgACTCTCACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTg                                                                                                                                             >  6:217163/1‑147 (MQ=255)   tcgACTCTCACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATACGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGcc                                                                                                                                           <  1:63394/149‑1 (MQ=255)   aaagatgtgctgacgcgtttgccgacacagcgggccagtgagatcgggcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaagggtgacaTGc                                                                                                                                            >  7:90596‑M1/146‑148 (MQ=255)   aaagatgtgctgacgcggttgccgccacagcgggccagtgagatcgggcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaagggtgacaTGcc                                                                                                                                           <  1:143791‑M1/4‑1 (MQ=255)   aaagatgtgctgacgcggttgccgacacagcgggccagtgagatcgggcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaagggtgacaTGc                                                                                                                                            >  4:133524‑M1/146‑148 (MQ=255)        tgtgctgacgcggttgccgacacagcgggccagtgagatcgggcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaagggtgacaTGCCGGTc                                                                                                                                       >  8:252704‑M1/141‑148 (MQ=255)            aCCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGc                                                                                                                                     <  5:217163/146‑1 (MQ=255)            aCCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGc                                                                                                                                     <  4:287581/146‑1 (MQ=255)            aCCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCg                                                                                                                                  >  6:80154/1‑149 (MQ=255)            aCCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCg                                                                                                                                  >  3:242626/1‑149 (MQ=255)              ccGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGtt                                                                                                                                <  5:73468/149‑1 (MQ=255)                     cGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAg                                                                                                                         <  1:98530/149‑1 (MQ=255)                           aaaCATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGt                                                                                                                   >  5:259081/1‑149 (MQ=255)                               aTTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGc                                                                                                               >  2:231559/1‑149 (MQ=255)                                  cGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTg                                                                                                             >  6:74104/1‑148 (MQ=255)                                      ttCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCg                                                                                                        >  7:154548/1‑149 (MQ=255)                                       tCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCTGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCg                                                                                                        <  1:168528/148‑1 (MQ=255)                                         aGGGTGACGCCATTTCCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGc                                                                                                      <  4:73950/148‑1 (MQ=255)                                            gatcgggcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaagggtgacaTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGc                                                                                                      <  1:228088‑M1/41‑1 (MQ=255)                                            gatcgggcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaagggtgacaTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGc                                                                                                      >  2:228088‑M1/105‑145 (MQ=255)                                               aCGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATg                                                                                                   >  6:34690/1‑145 (MQ=255)                                               aCGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATg                                                                                                   <  5:34690/145‑1 (MQ=255)                                               aCGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCa                                                                                                <  4:96650/148‑1 (MQ=255)                                                 gCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCAccc                                                                                             <  2:8432/149‑1 (MQ=255)                                                  gcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaggggtgacaTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCAt                                                                                                    <  4:191301‑M1/43‑1 (MQ=255)                                                  gcaactgctgccgcatcagtgggtatcggcctgacttacgcaaggtgcgttgggcggacgcttactacagcgaggccatttcgcattgaggggtgacaTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCAt                                                                                                    >  3:191301‑M1/99‑141 (MQ=255)                                                         cAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATg                                                                                      <  3:60312/148‑1 (MQ=255)                                                         cAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGc                                                                                     >  5:180386/1‑149 (MQ=255)                                                           aaaGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGa                                                                                   <  1:7001/149‑1 (MQ=255)                                                                      gCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCg                                                                         <  6:180386/148‑1 (MQ=255)                                                                             cTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTgtagt                                                                  >  7:279245/1‑148 (MQ=255)                                                                               cgcgCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTc                                                                                                 >  3:277470/1‑115 (MQ=255)                                                                               cgcgCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTc                                                                                                 <  4:277470/115‑1 (MQ=255)                                                                                gcgcCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTaa                                                                <  5:74104/147‑1 (MQ=255)                                                                                                    ccTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGc                                          >  6:84414/1‑149 (MQ=255)                                                                                                    ccTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGc                                          <  6:259081/149‑1 (MQ=255)                                                                                                      tctATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCg                                         >  1:31502/1‑148 (MQ=255)                                                                                                          tGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTaa                                      <  4:120482/147‑1 (MQ=255)                                                                                                               aTGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGc                               <  1:231559/149‑1 (MQ=255)                                                                                                                     aGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATAc                         <  2:31502/149‑1 (MQ=255)                                                                                                                           tttCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACt                    >  4:301532/1‑148 (MQ=255)                                                                                                                                gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGc                               <  5:81603/132‑1 (MQ=255)                                                                                                                                gATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGc                               >  6:81603/1‑132 (MQ=255)                                                                                                                                 aTCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCgg             >  5:100516/1‑149 (MQ=255)                                                                                                                                    gAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGgcag          <  5:80154/149‑1 (MQ=255)                                                                                                                                      aTCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGgcag          >  3:95402/1‑147 (MQ=255)                                                                                                                                       tCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGGATGTCACCCGTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACGTTGCGTAAGTCAGGCCGATACCCTCTGATGCGGccgcag       >  7:284443/1‑149 (MQ=38)                                                                                                                                       tCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGcagcag       >  2:287091/1‑149 (MQ=255)                                                                                                                                            gCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGGCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGcc  <  4:242626/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                             CGTCGACTCTCACCCGGTTACGATCGAAACATTCGGTTTCAGGGTGACGCCATTTGCAAAAGCGCAGTTGCATGACCTCGCGCCAGACGTAATTGTGTGCCTCTATGCGGATGGGCAGACACTTTCCGATCGAATCAAGGCAAATCCTGCCGGTCGCCCGTTGCCGAAGGCAAGTGAGCTGGACCGGCATGTCACCCTTCAATGCGAAATGGCCTCGCTGTAGTAAGCGTCCGCCCAACGCACCTTGCGTAAGTCAGGCCGATACCCACTGATGCGGCAGCAGTTGCC  >  NC_002947/6152686‑6152973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.