New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 144237	46 (0.940)	6 (0.130)	4/244	NT	12.7%	intergenic (+216/‑530)	PP_0136/gltP	hypothetical protein/glutamate/aspartate‑proton DAACS transporter
	?	NC_002947	= 144275	40 (0.880)					intergenic (+254/‑492)	PP_0136/gltP	hypothetical protein/glutamate/aspartate‑proton DAACS transporter

CATGACCAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTCGAACA  >  NC_002947/144129‑144421                                                                                                                                                   |                                                                                                                                                   caTGACCAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTga                                                                                                                                                  >  4:109697‑M2/1‑147 (MQ=255)  aTGACCAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgac                                                                                                                                                 >  1:77907‑M2/1‑146 (MQ=255)      ccAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTga                                                                                                                                                  >  8:23323‑M2/1‑142 (MQ=255)      ccAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTga                                                                                                                                                  <  7:23323‑M2/144‑3 (MQ=255)           gggTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCgagga                                                                                                                                        <  5:167082/149‑1 (MQ=255)              tCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGcc                                                                                                                                     <  4:239711/149‑1 (MQ=255)              tCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGcc                                                                                                                                     <  7:73021/149‑1 (MQ=255)                      ctctGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAgg                                                                                                                              >  6:45725/1‑148 (MQ=255)                        ctGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGaaa                                                                                                                           >  3:153210/1‑149 (MQ=255)                         tGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAAc                                                                                                                          >  4:294719/1‑149 (MQ=255)                           aTTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTga                                                                                                                                                  <  6:41149‑M2/123‑3 (MQ=255)                                   aGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTccc                                                                                                                >  2:189984/1‑149 (MQ=255)                                        cGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTgcg                                                                                                           >  6:71031/1‑149 (MQ=255)                                             tGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGttt                                                                                                      <  5:45725/149‑1 (MQ=255)                                                     gggTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCt                                                                                              <  3:294719/149‑1 (MQ=255)                                                       gTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGcc                                                                                                                                     <  2:94009/108‑1 (MQ=255)                                                       gTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGcc                                                                                                                                     >  1:94009/1‑108 (MQ=255)                                                       gTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTgg                                                                                            >  6:248182/1‑149 (MQ=255)                                                             ggAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGAcaca                                                                                      >  1:74318/1‑149 (MQ=255)                                                               aGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACAtt                                                                                    <  2:74318/149‑1 (MQ=255)                                                                 tGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACAtttt                                                                                  <  2:74892/149‑1 (MQ=255)                                                                 tGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACAttt                                                                                   <  5:248182/148‑1 (MQ=255)                                                                   ccTCCGGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGt                                                                                >  7:280349/1‑149 (MQ=255)                                                                   ccTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGt                                                                                >  5:123360/1‑149 (MQ=255)                                                                   ccTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGACTCACGTCGGCGGTGACACAGGGATACCTTCCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGACGCTTCCCATCCGCGTATAAACCCCAGCGACACATATTGt                                                                                >  2:219620/1‑149 (MQ=255)                                                                     tCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCAGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGtct                                                                              >  4:286281/1‑149 (MQ=255)                                                                          tAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGGCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGAcc                                                                         <  5:71031/149‑1 (MQ=255)                                                                              gggCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGAcaca                                                                                      >  4:155141/1‑132 (MQ=255)                                                                              gggCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGAcaca                                                                                      <  3:155141/132‑1 (MQ=255)                                                                                gCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACAt                                                                   <  4:153210/149‑1 (MQ=255)                                                                                         ggAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAAttttt                                                          >  2:99687/1‑149 (MQ=255)                                                                                         ggAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAAttttt                                                          <  1:189984/149‑1 (MQ=255)                                                                                          gAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAAtttttt                                                         >  1:200674/1‑149 (MQ=255)                                                                                          gAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAAtttttt                                                         >  2:140295/1‑149 (MQ=255)                                                                                           aaaGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAAttttttt                                                        <  6:123360/149‑1 (MQ=255)                                                                                               gCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGAc                                                    >  7:115284/1‑149 (MQ=255)                                                                                                  gAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCACTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCtt                                                 >  5:266534/1‑149 (MQ=255)                                                                                                       ggAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgacttccgattccgcctttcctgacccggcccattactggaggcactccctgtacccctaggccactccggtcctgtaacaatcagagcagcccgaccccttgg                                            <  8:182859‑M2/149‑105 (MQ=255)                                                                                                       ggAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgacttccgattccgcctttcctgacccggcccattactggaggcactccctgtacccctaggccactccggtcct                                                                         <  2:78991‑M2/120‑76 (MQ=255)                                                                                                       ggAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgacttccgattccgcctttcctgacccggcccattactggaggcactccctgtacccctaggccactccggtcct                                                                         >  1:78991‑M2/1‑45 (MQ=255)                                                                                                       ggAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCgg                                            >  3:60390/1‑149 (MQ=255)                                                                                                            tctcAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGtgctg                                       >  3:39220/1‑149 (MQ=255)                                                                                                             ctcAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGtgctg                                       <  8:115284/148‑1 (MQ=255)                                                                                                              tcAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgagacttccgattccgcctttcctgacccggcccattactggaggcactccctgtacccctaggccactccggtcct                                                                       <  3:93804‑M2/115‑78 (MQ=255)                                                                                                              tcAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgagacttccgattccgcctttcctgacccggcccattactggaggcactccctgtacccctaggccactccggtcct                                                                       >  4:93804‑M2/1‑38 (MQ=255)                                                                                                              tcAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGtgctgc                                      >  2:178543/1‑148 (MQ=255)                                                                                                                aGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTgacttccgattccgcctttcctgacccggcccattactggaggcactccctgtacccctaggccactccggtcctgtaacaatcagagcagcccgaccccttggtcatgtg                                     >  7:182859‑M2/1‑36 (MQ=255)                                                                                                                   tCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTAc                                   >  6:274000/1‑146 (MQ=255)                                                                                                                   tCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTAc                                   <  5:274000/146‑1 (MQ=255)                                                                                                                              acaGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGATACAAGTGGCATTTCCg                     >  6:249944/1‑149 (MQ=255)                                                                                                                                       ccTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGACACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGa            <  6:289428/149‑1 (MQ=255)                                                                                                                                              aGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTCg      >  2:277355/1‑148 (MQ=255)                                                                                                                                                 ccTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTCGAACa  <  2:200674/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                   CATGACCAAGGGGTCGGGCTGCTCTGATTGTTACAGGACCGGAGTGGCCTAGGGGTACAGGGAGTGCCTCCAGTAATGGGCCGGGTCAGGAAAGGCGGAATCGGAAGTCTCAGGTCGGCGGTGTCACAGGGATACCTTGCCAGACCTGACTTCCGAGGAGCCATGTAGGAAACGTCGCTTCCCTTGCGCGTTTTTTCCCCTGGGACACATTTTGTCTCGACCGTACATCAAATTTTTTTCGACCTTCTCGGTGCTGCTACAAGTGGCATTTCCGCCATTCGGATTGTCGAACA  >  NC_002947/144129‑144421

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.