New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 578580	51 (1.040)	4 (0.090)	3/252	NT	7.6%	coding (549/951 nt)	fdoH	formate dehydrogenase‑O subunit beta
	?	NC_002947	= 578607	48 (1.020)					coding (576/951 nt)	fdoH	formate dehydrogenase‑O subunit beta

TCCCGCGTATCTCGCAGAAAGACCACAAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGAAGCTGTATGCCGGCCTGCCGGAC  >  NC_002947/578459‑578745                                                                                                                                                     |                                                                                                                                           tCCCGCGTATCTCGCAGAAAGACCACAAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCg                                                                                                                                            >  6:169773/1‑149 (MQ=255)          tctcGCAGAAAGACCACAAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAgcg                                                                                                                                    >  6:218378/1‑148 (MQ=255)              gCAGAAAGACCACAAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCAtcg                                                                                                                               <  3:89227/149‑1 (MQ=255)               cAGAACGACCACAAGGCGGCAAAGTGCACCCTGTGTTCCGATCGCGTGAGCGAGGGGCTCGAGACGGACTGGGAGAAAACCTGCCCAACCGGGGCGATCCGGATCGGCAGCAAGGACGAGAGGCGACTGGAGGCGGGCCGGCGCAtcgg                                                                                                                              >  4:94302/1‑148 (MQ=255)                  aaaGACCACAAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTCCATGCGGCCGAGCGCATCGTCGa                                                                                                                           >  8:71333/1‑149 (MQ=255)                     gACCACAAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCt                                                                                                                        >  2:168820/1‑149 (MQ=255)                      aCCACAAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTg                                                                                                                       <  6:270893/149‑1 (MQ=255)                       ccACAAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGa                                                                                                                      <  1:65775/149‑1 (MQ=255)                        cacaAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGaa                                                                                                                     <  1:29352/149‑1 (MQ=255)                         acaAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCAtc                                                                                                                                >  1:124570/1‑137 (MQ=255)                         acaAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCAtc                                                                                                                                <  2:124570/137‑1 (MQ=255)                           aaGGCGTACAAGTGCATCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTc                                                                                                                  >  2:186920/1‑149 (MQ=255)                                gTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCa                                                                                                                                  >  5:266957/1‑128 (MQ=255)                                gTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCa                                                                                                                                  <  6:266957/128‑1 (MQ=255)                                  aCAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGc                                                                                                           >  4:170057/1‑149 (MQ=255)                                     aGTGCATCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTAc                                                                                                        <  1:186920/149‑1 (MQ=255)                                       tGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGa                                                                                                      >  1:170601/1‑149 (MQ=255)                                        gCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCACCGTCGATCTGAAGTCGCGGGGCTACGa                                                                                                      >  4:279112/1‑148 (MQ=255)                                          aCCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGAGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACaa                                                                                                   <  8:221796/149‑1 (MQ=255)                                              tgtgTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGGCGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGcc                                                                                               >  4:103278/1‑149 (MQ=255)                                               gtgtTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTcg                                                                                                                 >  7:97848/1‑130 (MQ=255)                                               gtgtTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTcg                                                                                                                 <  8:97848/130‑1 (MQ=255)                                                  ttCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGc                                                                                           >  8:270424/1‑149 (MQ=255)                                                          gcgTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGAc                                                                                   <  1:126742/149‑1 (MQ=255)                                                           cgTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGAcc                                                                                  >  6:140057/1‑149 (MQ=255)                                                             tGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCg                                                                                <  2:259084/149‑1 (MQ=255)                                                                        cTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCgg                                                                     <  3:94302/149‑1 (MQ=255)                                                                        cTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCgg                                                                     <  3:170057/149‑1 (MQ=255)                                                                          ggAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCggtg                                                                   <  7:270424/149‑1 (MQ=255)                                                                                  cATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCAc                                                           <  2:170601/149‑1 (MQ=255)                                                                                    tGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGt                                                         <  5:218378/149‑1 (MQ=255)                                                                                      cGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTg                                                        <  5:169773/148‑1 (MQ=255)                                                                                      cGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTg                                                        <  7:147001/148‑1 (MQ=255)                                                                                        tGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATg                                                     <  1:186033/149‑1 (MQ=255)                                                                                               cTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGAACCCACGTGATGTACGtgc                                              >  7:234274/1‑149 (MQ=255)                                                                                                  cccGACCGGGGCGATCGTGTTCGGCAGCAAGTACGAGATGAATGTGCATGCTTCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGtgctgc                                           <  6:200855/149‑1 (MQ=255)                                                                                                    cGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCAc                                         >  8:254514/1‑149 (MQ=255)                                                                                                          gggCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGcc                                   <  7:254514/149‑1 (MQ=255)                                                                                                           ggCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGcc                                   >  7:143698/1‑148 (MQ=255)                                                                                                              gATCGTGTTCGGCAGCAAGGACGAGATGAATGTGCATGCGgccgaacacgatcgccccggtcgggcaggttttcacgcatgccggctccagccccacgctcacgcgatcggaacacagggtgcacttgta                                                  <  1:25219‑M2/130‑91 (MQ=255)                                                                                                              gATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGgccgaacacgatcgccccggtcgggcaggttttcacgcatgccggctccagccccacgctcacgcgatcggaacacagggtgcacttgta                                                  >  2:25219‑M2/1‑40 (MQ=255)                                                                                                                    gtTCGGCAGCAAGGACGAGATGAAAGTGCATGCGgccgaacacgatcgccccggtcgggcaggttttcacgcatgccggctccagccccacgctcacgcgatcggaacacagggtgcacttgtacgccttgtggtctttctgcgagata                         <  6:161650‑M2/149‑116 (MQ=255)                                                                                                                    gtTCGGCAGCAAGGACGAGATGAAAGTGCATGCGgccgaacacgatcgccccggtcgggcaggttttcacgcatgccggctccagccccacgctcacgcgatcggaacacagggtgcacttgtacgccttgtggtctttctgcgagata                         <  4:94758‑M2/149‑116 (MQ=255)                                                                                                                     ttCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCg                          >  5:106597/1‑147 (MQ=255)                                                                                                                     ttCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGaa                        >  3:120602/1‑149 (MQ=255)                                                                                                                     ttCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATAGTCGATCTGAATTCGCGGGGCTACGACAAGGCCGGGATGTACGACACGGACGGCGTCGGTAGTACCCACCTGATGTACCTGCTGCACCATGCACACAcgacga                         >  7:251025/1‑148 (MQ=255)                                                                                                                          cagcaAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGAAGCTGt                   <  5:140057/149‑1 (MQ=255)                                                                                                                             caAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACTTCAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGAAGCTGTATg                >  1:88248/1‑149 (MQ=255)                                                                                                                             caAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGt                                                                                        <  2:98687/77‑1 (MQ=255)                                                                                                                              aaGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGtgctg                                            >  7:190983/1‑120 (MQ=255)                                                                                                                              aaGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGtgctg                                            <  8:190983/120‑1 (MQ=255)                                                                                                                                ggACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGAAGCTGTATGCCg             <  3:103278/149‑1 (MQ=255)                                                                                                                                   cGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGAAGCTGTATGCCGGcc          >  7:244329/1‑149 (MQ=255)                                                                                                                                    gagaTGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGAAGCTGTATGCCGGCCt         >  6:131209/1‑149 (MQ=255)                                                                                                                                           aaGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGAAGCTGTATGCCGGCCTGCCGGAc  <  1:168820/149‑1 (MQ=255)                                                                                                                                            aGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGAAGCTGTATGTCGGCCTGCCGGAc  >  4:221528/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                           TCCCGCGTATCTCGCAGAAAGACCACAAGGCGTACAAGTGCACCCTGTGTTCCGATCGCGTGAGCGTGGGGCTGGAGCCGGCATGCGTGAAAACCTGCCCGACCGGGGCGATCGTGTTCGGCAGCAAGGACGAGATGAAAGTGCATGCGGCCGAGCGCATCGTCGATCTGAAGTCGCGGGGCTACGACAAGGCCGGGCTGTACGACCCGGACGGCGTCGGTGGTACCCACGTGATGTACGTGCTGCACCATGCCGACACGCCGAAGCTGTATGCCGGCCTGCCGGAC  >  NC_002947/578459‑578745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.