New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	618313 =	56 (1.140)	3 (0.060)	3/248	NT	6.3%	coding (256/894 nt)	PP_0532	hypothetical protein
	?	NC_002947	618371 =	37 (0.800)					coding (198/894 nt)	PP_0532	hypothetical protein

GCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTCATGCTCGGGCTGGGCCAGGACAAGAG  >  NC_002947/618227‑618519                                                                                                                                                 |                                                                                                                                                     gcgcAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGAt                                                                                                                                                  >  5:237164/1‑149 (MQ=255)   gcAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTc                                                                                                                                                <  2:229081/149‑1 (MQ=255)         cGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCtt                                                                                                                                           <  2:252317/148‑1 (MQ=255)           ggccGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGcc                                                                                                                                        <  4:197309/147‑1 (MQ=255)               ggTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAAcc                                                                                                                                    >  8:19994/1‑149 (MQ=255)               ggTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAAcc                                                                                                                                    >  2:12740/1‑149 (MQ=255)                     ccACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTg                                                                                                                                          >  6:110440/1‑137 (MQ=255)                     ccACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTg                                                                                                                                          <  5:110440/137‑1 (MQ=255)                              ccaGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGa                                                                                                                     <  1:12740/149‑1 (MQ=255)                                     gggCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGc                                                                                                              <  7:61142/149‑1 (MQ=255)                                          ccTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCg                                                                                                         <  6:237164/149‑1 (MQ=255)                                                ccACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGGATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAg                                                                                                   <  4:288370/149‑1 (MQ=255)                                                ccACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAg                                                                                                   <  6:301155/149‑1 (MQ=255)                                                ccACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAg                                                                                                   >  4:57039/1‑149 (MQ=255)                                                 cACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCg                                                                                                                            <  6:50952/123‑1 (MQ=255)                                                 cACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCg                                                                                                                            >  5:50952/1‑123 (MQ=255)                                                     gCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTc                                                                                                 >  3:272054/1‑146 (MQ=255)                                                      cGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGa                                                                                             <  6:54739/149‑1 (MQ=255)                                                             gTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGa                                                                                                                                                      <  7:268975/85‑1 (MQ=255)                                                             gTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGa                                                                                                                                                      >  8:268975/1‑85 (MQ=255)                                                             gTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCt                                                                                      >  6:150383/1‑149 (MQ=255)                                                                 aGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGt                                                                                  <  7:19994/149‑1 (MQ=255)                                                                      ctgctgATCCAGCGTCACCAGCGCAGCATTCCCATCTAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAg                                                                              <  7:159951/148‑1 (MQ=255)                                                                         ctgATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGa                                                                           >  8:50053/1‑148 (MQ=255)                                                                         ctgATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGAt                                                                          <  3:57039/149‑1 (MQ=255)                                                                            aTCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAgg                                                                       >  5:4991/1‑149 (MQ=255)                                                                              ccAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGc                                                                      >  7:35175/1‑148 (MQ=255)                                                                                aGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAg                                                                   >  2:20787/1‑149 (MQ=255)                                                                                aGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAg                                                                   >  4:230417/1‑149 (MQ=255)                                                                                 gCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAgg                                                                  >  5:225033/1‑149 (MQ=255)                                                                                       ccagcgccagcatcggggtacccggtgctgtggatgctcgatgggaatgctgcgctggCCGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTgg                                                            >  8:270576‑M2/59‑149 (MQ=255)                                                                                       CCAGCACAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTgg                                                            <  7:260570‑M1/149‑1 (MQ=255)                                                                                        cagcgccagcatcggggtacccggtgctgtggatgctcgatgggaatgctgcgctggACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGc                                                                                                       <  5:37287‑M2/48‑1 (MQ=255)                                                                                        cagcgccagcatcggggtacccggtgctgtggatgctcgatgggaatgctgcgctggACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGc                                                                                                       >  6:37287‑M2/58‑105 (MQ=255)                                                                                          GCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGgcgc                                                         >  1:20787‑M1/1‑149 (MQ=255)                                                                                             CAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGt                                                      >  4:272054‑M1/1‑149 (MQ=255)                                                                                             CAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGt                                                      >  6:4991‑M1/1‑149 (MQ=255)                                                                                                    cccATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCg                                               >  1:131159/1‑149 (MQ=255)                                                                                                     ccATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGa                                              >  6:242801/1‑149 (MQ=255)                                                                                                          gAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACgtgt                                         <  5:242801/149‑1 (MQ=255)                                                                                                                ccACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCa                                                                    >  2:258235/1‑116 (MQ=255)                                                                                                                ccACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCa                                                                    <  1:258235/116‑1 (MQ=255)                                                                                                                   caGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCAtcttct                                <  7:50053/149‑1 (MQ=255)                                                                                                                    gcatcggggTA‑CCCGGTGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTgg                              >  5:167522/7‑149 (MQ=255)                                                                                                                      cACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGt                             >  8:232109/1‑149 (MQ=255)                                                                                                                       tcggggTA‑CCCGGTGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGgc                                                           >  2:113214/4‑117 (MQ=255)                                                                                                                       tcggggTA‑CCCGGTGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGgc                                                           <  1:113214/114‑1 (MQ=255)                                                                                                                                    attcTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTCATGCTCGGGCTgg               <  5:150383/146‑1 (MQ=255)                                                                                                                                         ggCGCTGGACGATTCGGCTTGCCAACCCCCAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATGAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTCATGCTCGGGCTGGGCCAg          >  6:255456/1‑149 (MQ=255)                                                                                                                                          gcgctggACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTCATGCTCGGGCTGGGCCAg          <  2:131159‑M2/141‑1 (MQ=255)                                                                                                                                              tggACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTCATGCTCGGGCTGGGCCAGGAc       >  7:187785‑M2/4‑147 (MQ=255)                                                                                                                                              tggACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTCATGCTCGGGCTGGGCCAGGAc       >  5:41902‑M2/4‑147 (MQ=255)                                                                                                                                                gACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGCCGTGTCCATCTTCTGGTCATGCTCGGGCTGGGCCAGGACaa     >  5:275724‑M2/2‑147 (MQ=255)                                                                                                                                                gACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTCATGCTCGGGCTGGGCCAGGACaa     >  4:271907‑M2/2‑147 (MQ=255)                                                                                                                                                 aCGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTCATGCTCGGGCTGGGCCAGGACAagag  <  8:260570/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     GCGCAGTTCGGTCCGGTAACCCACCGCCACCAGCAGGGGCGCCTGGCCCACGGCGAGCCTGTCCAGTTGCTGCTGATCCAGCGTCCCCAGCGCAGCATTCCCATCGAGCATCCACAGCACCGGGTACCCCGATGCTGGCGCTGGACGATTCGGCTTGCCAACCCACAGGCGGTAGTGACGCAGGCCATCGGCCGAGTCCAGATCAAGCTGGGTGAAGTGATAGGCCAGGTCCTGGCGCTGTAACACCGACGTGTCCATCTTCTGGTCATGCTCGGGCTGGGCCAGGACAAGAG  >  NC_002947/618227‑618519

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.