New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 668081	34 (0.690)	3 (0.080)	3/214	NT	9.6%	intergenic (+45/+107)	yfhM/PP_0571	lipoprotein/membrane protein
	?	NC_002947	= 668150	29 (0.730)					intergenic (+114/+38)	yfhM/PP_0571	lipoprotein/membrane protein

GGCAAGGGGAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAGGCC  >  NC_002947/668005‑668298                                                                                                                                                  |                                                                                                                                                      ggCAAGGGGAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtc                                                                                                                                                     >  1:244973‑M2/1‑146 (MQ=255) ggCAAGGGGAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtc                                                                                                                                                     >  8:60103‑M2/1‑146 (MQ=255)         gagaTGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTCGGCCTGCTGTGCAGCCCTGtcgcgaacc                                                                                                                                              <  5:93068‑M2/147‑10 (MQ=255)            aTGACGGTGAAAGCCGGGTTGTGACCGGGTCTACGCGTAATGTGTGGTTGGGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgactcaagg                                                                                                                                          >  6:93068‑M2/1‑135 (MQ=255)                cGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgct                                                                                                                                     >  4:264822‑M2/1‑131 (MQ=255)                  gTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcg                                                                                                                                                    <  3:277760‑M2/132‑4 (MQ=255)                  gTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcg                                                                                                                                                    >  4:277760‑M2/1‑129 (MQ=255)                      aaGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTGGCGAAAGGGCCGCCAAGCGGCCCCGACCAATAAAGCGGCGCAGCTGAAAGCCTGGGGCTGCGGTGCCGCCCAGTAGCGCCGCCAAGCCGCGCCcac                                                                                                                                >  6:122260/1‑148 (MQ=25)                                      cGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCCAAGCGGCCCCGACACTTCAAGCGGCGCAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGCCGCCAGGCCGCTGCCACAAAGACCGCGCAGAt                                                                                                                 >  7:1613/1‑147 (MQ=37)                                                ggAAAGTGGGGGAGCGGCCTTGCGTCGCGATAGGGCCGAAACGCGGCCCCGACAATTCAACCGGCCAAGCTGAAAGCCTGGGGCTGCTGTCCAGCCCTGGCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑cc                                                                                                    <  1:209041/149‑1 (MQ=37)                                                          ggAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCCCCAAGACCGCGCAGAACACTGGATCA‑CCCAGcggcaaa                                                                                          >  8:201248/1‑143 (MQ=37)                                                            aGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCAcc                                                                                        >  8:84491/1‑149 (MQ=255)                                                                         cgctATTGGGCCGAAAAGCGGCCCCGACAATTCAAGCGGCTAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGGCGCGACGAAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCa                                                                           <  4:59176/149‑1 (MQ=255)                                                                          gcgATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggctttcaccgtcatctccccttgc                                                                           <  5:145786‑M2/149‑77 (MQ=255)                                                                            gATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggcttt                                                                                              <  6:136441‑M2/128‑58 (MQ=255)                                                                            gATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGtcgcgacgcaaggccgctcccacactttccgcgtagagcgggtctctagcgggcttt                                                                                              >  5:136441‑M2/1‑71 (MQ=255)                                                                            gATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCAcca                                                                        <  8:92109/149‑1 (MQ=255)                                                                            gATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCAc                                                                          >  7:92109/1‑147 (MQ=255)                                                                               aGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCAccagc                                                                      >  1:60651/1‑148 (MQ=255)                                                                                 ggCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCAccagc                                                                      >  8:183615/1‑146 (MQ=255)                                                                                  gCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAga                                                                  <  7:84491/149‑1 (MQ=255)                                                                                     gCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAgatga                                                               >  5:172413/1‑149 (MQ=255)                                                                                      cAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAgat                                                                 <  5:220567/146‑1 (MQ=255)                                                                                      cAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAgat                                                                 >  6:220567/1‑146 (MQ=255)                                                                                      cAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCACTGTAGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCC‑CCCAGCTCATCACCAACAGACCAAGCACGAGCCAgatgat                                                              >  6:223963/1‑149 (MQ=39)                                                                                       aaaGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGAtt                                                             >  1:52368/1‑149 (MQ=255)                                                                                             gCCCCGACAATTCACGCGGCGAAGCGCAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCCACGAAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAgg                                                       <  5:122260/149‑1 (MQ=255)                                                                                               cccGACAATTCCACCGGCCAAGGTTAAACCCTGGGGCTGGTGTGCACCCCTGTCGCCACGCAAGGCCGCTCCCAAAAATAACGCGCATATCATTGGATCATCCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGga                                                      <  1:71430/149‑1 (MQ=255)                                                                                                 cGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGgatga                                                   <  7:201248/149‑1 (MQ=255)                                                                                                       ttCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGCCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAgg                                             >  1:287305/1‑149 (MQ=255)                                                                                                                      tGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGCCCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATgcgc                              >  6:70629/1‑149 (MQ=255)                                                                                                                       gAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCTGAGGATGATCGAGGCGCGCATGAATGcgcg                             >  2:217894/1‑149 (MQ=255)                                                                                                                        aaaGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATgcgc                              <  7:183615/147‑1 (MQ=255)                                                                                                                        aaaGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATgcgc                              <  8:204427/147‑1 (MQ=255)                                                                                                                                gggCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGcc                      <  2:60651/147‑1 (MQ=255)                                                                                                                                gggCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGa                    <  2:52368/149‑1 (MQ=255)                                                                                                                                     gctgTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTa                 >  4:142282/1‑147 (MQ=255)                                                                                                                                      ctgTGCAGCACTGTCGCGGCGCAAGGCCGCTCACACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTAcag              >  3:188590/1‑149 (MQ=255)                                                                                                                                         tgCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTAcagcag           >  7:259962/1‑149 (MQ=255)                                                                                                                                           cAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAgcagca         >  7:181014/1‑149 (MQ=255)                                                                                                                                               ccTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAg     >  6:91974/1‑149 (MQ=255)                                                                                                                                                  gTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAGGcc  >  2:262829/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                      GGCAAGGGGAGATGACGGTGAAAGCCCGCTAGAGACCCGCTCTACGCGGAAAGTGTGGGAGCGGCCTTGCGTCGCGATAGGGCCGCAAAGCGGCCCCGACAATTCAAGCGGCGAAGCTGAAAGCCTGGGGCTGCTGTGCAGCCCTGTCGCGACGCAAGGCCGCTCCCACAAAGACCGCGCAGATCAGTGGATCA‑CCCAGCTCATCACCCACAGCCCCAGCACCAGCCAGATGATTCCGAGGATGATCGAGGCGCGCATGAATGCGCGGATTGCCGAGTACAGCAGCATCAGGCC  >  NC_002947/668005‑668298

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.