New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	883223 =	55 (1.120)	4 (0.090)	4/250	NT	7.7%	coding (826/1365 nt)	PP_0766	hypothetical protein
	?	NC_002947	883266 =	43 (0.920)					coding (869/1365 nt)	PP_0766	hypothetical protein

TGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGGGCACATCAACCAGGACCTGG  >  NC_002947/883119‑883412                                                                                                                                                    |                                                                                                                                                   cttcagcttggggtcatccagcttgaaggcgttggaggcgatgtacagttccttcttgccttccagcttccagtcataacggtccggtgcaccgttgaacatgtCCAGGTT‑‑GTC‑‑CGACGGCCTGCGTACGTCGGACAACCTGGACATGt                                                                                                                                               >  3:61948‑M1/105‑149 (MQ=255) cttcagcttggggtcatccagcttgaaggcgttggaggcgatgtacagttccttcttgccttccagcttccagtcataacggtccggtgcaccgttgaacatgtCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGAc                                                                                                                                                   >  6:80887‑M1/105‑149 (MQ=255)   gTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACa                                                                                                                                                  <  2:257975/148‑1 (MQ=255)        ttggggtcatccagcttgaaggcgttggaggcgatgtacagttccttcttgccttccagcttccagtcataacggtccggtgcaccgttgaacatgtCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACAt                                                                                                                                                 <  2:282294‑M1/47‑1 (MQ=255)        ttggggtcatccagcttgaaggcgttggaggcgatgtacagttccttcttgccttccagcttccagtcataacggtccggtgcaccgttgaacatgtCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACAt                                                                                                                                                 >  1:282294‑M1/98‑144 (MQ=255)              ccTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTg                                                                                                                                      <  4:137112/149‑1 (MQ=255)              ccTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTg                                                                                                                                      <  5:229731/149‑1 (MQ=255)                  gACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCAcc                                                                                                                                  >  8:45908/1‑149 (MQ=255)                    ccAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCgg                                                                                                                                <  2:166493/149‑1 (MQ=255)                        gTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCg                                                                                                                                 >  1:138421/1‑144 (MQ=255)                        gTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCg                                                                                                                                 <  2:138421/144‑1 (MQ=255)                        gTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCg                                                                                                                            >  4:212252/1‑149 (MQ=255)                            aGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACTACCTGGACATGTTCAACGGTGCACCGGACCGTTAt                                                                                                                        <  2:87415/149‑1 (MQ=255)                              gAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGa                                                                                                                               >  4:225616/1‑140 (MQ=255)                              gAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGa                                                                                                                               <  3:225616/140‑1 (MQ=255)                              gAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGa                                                                                                                      >  6:90110/1‑149 (MQ=255)                               aGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGAc                                                                                                                     >  1:219871/1‑149 (MQ=255)                                   gcgcAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGCGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActgga                                                                                                                 <  5:105916/149‑1 (MQ=255)                                      cAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGCTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActggaagc                                                                                                              <  1:97485/149‑1 (MQ=255)                                       aaGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActggaagct                                                                                                             >  5:147830/1‑149 (MQ=255)                                        aGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActggaagctg                                                                                                            <  4:13210/149‑1 (MQ=255)                                           ctttgATATACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCTCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCTGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGActggaagctggaa                                                                                                         <  8:77026/145‑1 (MQ=255)                                               gATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGc                                                                                                      >  4:278216/1‑148 (MQ=255)                                                    aCAACGCCGGTCAACGCCGTGTGCGCCAGGCTCCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCaagaag                                                                                                >  3:214194/1‑149 (MQ=255)                                                       aCGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGaa                                                                                             <  4:124225/149‑1 (MQ=255)                                                       aCGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGaa                                                                                             <  3:68448/149‑1 (MQ=255)                                                        cGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAAc                                                                                            <  6:33370/149‑1 (MQ=255)                                                          ccGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTg                                                                                          <  6:147830/149‑1 (MQ=255)                                                             gTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTg                                                                                          >  2:220947/1‑146 (MQ=255)                                                             gTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTg                                                                                          <  1:220947/146‑1 (MQ=255)                                                                aaCGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATc                                                                                    >  1:37446/1‑149 (MQ=255)                                                                      gtgtGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACAGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTc                                                                               >  4:293179/1‑148 (MQ=255)                                                                         tgCGCCAGTCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGGCGGACAACCTGGACATGTTCAACGGTGCACCGGACCTTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAAc                                                                           <  3:63596/149‑1 (MQ=255)                                                                          gcgcCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACg                                                                          >  6:286101/1‑149 (MQ=255)                                                                                    ccGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACCTCGCCTCCAACGCCTTCAAGCt                                                                <  7:45908/149‑1 (MQ=255)                                                                                       cAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGa                                                             <  2:37446/149‑1 (MQ=255)                                                                                          gtgtCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGa                                                          <  3:212252/149‑1 (MQ=255)                                                                                                tATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCGAACGc                                                                         <  7:97837/128‑1 (MQ=255)                                                                                                tATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGc                                                                         >  8:97837/1‑128 (MQ=255)                                                                                                 aTGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATc                                                                                    <  4:113533/116‑1 (MQ=255)                                                                                                 aTGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATc                                                                                    >  3:113533/1‑116 (MQ=255)                                                                                                  tGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGc                                                  <  4:85492/149‑1 (MQ=255)                                                                                                  tGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGc                                                  >  4:130856/1‑149 (MQ=255)                                                                                                     atgtccaggttgtccgacgtacgcaggccgtcggcggcggtacctggACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCaa                                                    >  1:282294‑M2/48‑144 (MQ=255)                                                                                                     atgtccaggttgtccgacgtacgcaggccgtcggcggcggtacctggACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCaa                                                    <  2:282294‑M2/97‑1 (MQ=255)                                                                                                      ggCCCAGGTACCGCCGCCGACGTCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCTGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGaa                                              <  2:219871/149‑1 (MQ=255)                                                                                                       gtccaggttgtccgacgtacgcaggccgtcggcggcggtacctggACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAg                                             >  6:80887‑M2/46‑149 (MQ=255)                                                                                                       acatgtccaggttgtccgacgtacgcaggccgtcggacaacctggACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAg                                             >  3:61948‑M2/46‑149 (MQ=255)                                                                                                             GTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGcc                                       >  2:112371‑M1/1‑149 (MQ=255)                                                                                                                            gCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGcc                        <  3:293179/149‑1 (MQ=255)                                                                                                                               gcaggccGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCATGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCggg                     <  8:38281/143‑1 (MQ=255)                                                                                                                                  gTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGGGca                   >  4:37322/1‑148 (MQ=255)                                                                                                                                       tCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGGGCCCATCaa             >  8:71293/1‑149 (MQ=255)                                                                                                                                         ggACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGGGCACATCAAcc           <  3:278216/149‑1 (MQ=255)                                                                                                                                         ggACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATCACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGCGCACATCAAc            >  8:262005/1‑148 (MQ=255)                                                                                                                                         ggACAACCTGCACATGTTCAACGGTGCACCGGGCCGATATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCCCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGGGCACATCAAcc           >  2:108721/1‑149 (MQ=255)                                                                                                                                          gACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGGGCACATCAAc            >  8:60344/1‑147 (MQ=255)                                                                                                                                           aCAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGGGCACATCAACCAg         <  4:214194/149‑1 (MQ=255)                                                                                                                                               cctggACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGAcc                                                        <  2:1751‑M2/93‑1 (MQ=255)                                                                                                                                                   gACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGGGCACATCAACCAGGACCTgg  <  3:130856‑M2/147‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TGGTGCACGAAACCCTCGACCAGGTGAAGGAGCCGCGCAAGGCGTGGATCTACAACGCCGGTCAACGCCGTGTGCGCCAGGCACCGCAAGTGTCGTATGACGGCCCAGGTACCGCCGCCGACGGCCTGCGTACGTCGGACAACCTGGACATGTTCAACGGTGCACCGGACCGTTATGACTGGAAGCTGGAAGGCAAGAAGGAACTGTACATCGCCTCCAACGCCTTCAAGCTGGATGACCCCAAGCTGAAGTACGCCGACATCATCAAGGCCGGGCACATCAACCAGGACCTGG  >  NC_002947/883119‑883412

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.