New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1025257	37 (0.760)	4 (0.080)	4/256	NT	9.3%	intergenic (‑111/+118)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	= 1025369	42 (0.880)					intergenic (‑223/+6)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein

CGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCGCTGCTGGGCCT  >  NC_002947/1025223‑1025517                                                                                                                                                   |                                                                                                                                                      cgcgGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCATGCCCGCGAAGACGCCGGTTCTGGCTaa                                                                                                                                                     <  1:167816‑M2/149‑3 (MQ=255)        tCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTaa                                                                                                                                              >  3:250989/1‑149 (MQ=255)           ccGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATc                                                                                                                                            >  3:66220/1‑148 (MQ=255)              ggtaGATTCGGGGCTTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCCGGTTGGGCGCAGTGTCCTAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAaca                                                                                                                                        <  4:66220/146‑1 (MQ=38)                cAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACt                                                                                                                                      >  7:232734/1‑149 (MQ=255)                     tCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGAGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCacac                                                                                                                                 >  4:252326/1‑149 (MQ=255)                        gggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCg                                                                                                                               >  8:160025/1‑148 (MQ=255)                                     gCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑gc                                                                                                                 <  8:232734/148‑1 (MQ=255)                                     gCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑gc                                                                                                                 <  4:37290/148‑1 (MQ=255)                                      ccGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑gcgc                                                                                                               >  4:88992/1‑149 (MQ=255)                                             ggCCTCTTCGCGGGCAAGCCCCCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCAGTGGGAGCCGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACg                                                                                                        >  4:122855/1‑149 (MQ=255)                                              gCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACgg                                                                                                       >  6:295135/1‑149 (MQ=255)                                                ctctTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGc                                                                                                     >  6:249805/1‑149 (MQ=255)                                                    tCGCGGGCAAGCCCGCACCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGAc                                                                                                 >  2:270909/1‑149 (MQ=255)                                                     cgcgGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGAc                                                                                                 <  4:250989/148‑1 (MQ=255)                                                         ggCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCACCACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTg                                                                                             >  4:88112/1‑148 (MQ=255)                                                         ggCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTg                                                                                             >  8:78367/1‑148 (MQ=255)                                                               cccGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacc                                                                                       <  8:105103‑M2/149‑65 (MQ=255)                                                                 cGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacccg                                                                                     <  5:75910‑M2/149‑67 (MQ=255)                                                                  gCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGaaa                                                                                   <  5:311419/149‑1 (MQ=255)                                                                   cTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacccggc                                                                                   >  6:75910‑M2/1‑81 (MQ=255)                                                                      ccTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAAcc                                                                                 <  1:270909/147‑1 (MQ=255)                                                                          aGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGAc                                                                            <  7:78367/148‑1 (MQ=255)                                                                           ggTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGc                                                                          <  5:295135/149‑1 (MQ=255)                                                                               gggCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacccggcccacaaggccgg                                                                       >  7:105103‑M2/1‑69 (MQ=255)                                                                                ggCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑CCGCCCAAACGGGCTGACCTTGAACTGGGAACCCTTGACGCTAAGc                                                                     >  4:36333/1‑149 (MQ=255)                                                                                agcgcAGTGTCCGAACCTGTCTAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGc                                                                     <  3:252326/148‑1 (MQ=255)                                                                                   gcAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑gcg                                                                                                                >  2:97127/1‑103 (MQ=255)                                                                                   gcAGTGTCCGAACCTGTCGAGATCCAGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑gcg                                                                                                                <  1:97127/103‑1 (MQ=255)                                                                                       tgtCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggctggc                                                              >  6:198748/1‑149 (MQ=255)                                                                                       tgtCCGAACCTGTCGACATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTCGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCggctgg                                                               <  1:234775/149‑1 (MQ=255)                                                                                            gAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTaa                                                                                                                                              >  5:40119/1‑65 (MQ=255)                                                                                            gAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTaa                                                                                                                                              <  6:40119/65‑1 (MQ=255)                                                                                                cTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATg                                                      <  5:71462/148‑1 (MQ=255)                                                                                                cTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATg                                                      >  6:71462/1‑148 (MQ=255)                                                                                                  gTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGaa                                                   >  2:132280/1‑149 (MQ=255)                                                                                                     gagaTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATgc                                                <  3:88992/149‑1 (MQ=255)                                                                                                              tgGGAGGGGGCTGGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGc                                       <  3:211735/149‑1 (MQ=255)                                                                                                              tgGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGc                                       <  1:132280/149‑1 (MQ=255)                                                                                                              tgGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGc                                       <  5:249805/149‑1 (MQ=255)                                                                                                                  aGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTaa                                   >  4:216903/1‑149 (MQ=255)                                                                                                                  aGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTaa                                   <  3:122855/149‑1 (MQ=255)                                                                                                                            cccGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACct                          <  3:216903/148‑1 (MQ=255)                                                                                                                                 gAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTgctgct                    >  7:133171/1‑149 (MQ=255)                                                                                                                                  aaGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCtt                   <  7:160025/149‑1 (MQ=255)                                                                                                                                         cGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCgc            >  6:305423/1‑149 (MQ=255)                                                                                                                                              cTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCGctgctg       >  1:32703/1‑149 (MQ=255)                                                                                                                                                ggCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATgcgc                                              <  2:104167/108‑1 (MQ=255)                                                                                                                                                ggCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATgcgc                                              >  1:104167/1‑108 (MQ=255)                                                                                                                                                ggCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCtgctgc                     <  2:131648/133‑1 (MQ=255)                                                                                                                                                ggCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCtgctgc                     >  1:131648/1‑133 (MQ=255)                                                                                                                                                   tAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGCGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACATGCTGATTGAGCCGCTGCTGGTCct  >  6:9984/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                      CGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATT‑GCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGGCGTAATCGGTACCTGCTGCTTGAGCCGCTGCTGGGCCT  >  NC_002947/1025223‑1025517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.