New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1485867	47 (0.960)	3 (0.070)	3/244	NT	6.6%	coding (756/1098 nt)	yhdY	amino acid ABC transporter permease
	?	NC_002947	= 1485897	41 (0.900)					coding (786/1098 nt)	yhdY	amino acid ABC transporter permease

GGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTGTTC  >  NC_002947/1485753‑1486044                                                                                                                                                 |                                                                                                                                                    ggTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccg                                                                                                                                                 <  3:298223‑M2/149‑5 (MQ=255)            cGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATg                                                                                                                                      >  3:59992/1‑149 (MQ=255)              ttgttCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATggg                                                                                                                                    <  4:85554/149‑1 (MQ=255)               tgttCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGc                                                                                                                                   >  1:86298/1‑149 (MQ=255)                     tGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGc                                                                                                                             >  5:282641/1‑149 (MQ=255)                       ccAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTa                                                                                                                           >  6:14443/1‑149 (MQ=255)                         aGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACt                                                                                                                         >  1:201456/1‑149 (MQ=255)                               cATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCt                                                                                                                   <  8:276181/149‑1 (MQ=255)                                         gACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCACAAGGGCCAGTACGAAg                                                                                                                                                    >  7:202307‑M2/1‑105 (MQ=255)                                         gACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCACAAGGGCCAGTACGAAg                                                                                                                                                    <  8:202307‑M2/106‑2 (MQ=255)                                          aCAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTg                                                                                                        <  5:121321/149‑1 (MQ=255)                                             aGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTg                                                                                                     <  4:59992/149‑1 (MQ=255)                                                tgctgcGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGt                                                                                                      <  2:236354/145‑1 (MQ=255)                                                tgctgcGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGt                                                                                                      >  1:236354/1‑145 (MQ=255)                                                   tgcGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTg                                                                                               <  2:93456/149‑1 (MQ=255)                                                     cGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGcc                                                                                             <  4:209186/149‑1 (MQ=255)                                                     cGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGc                                                                                              <  5:14443/148‑1 (MQ=255)                                                      gggCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCg                                                                                            <  6:282641/149‑1 (MQ=255)                                                               tCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCt                                                                                    >  3:140950/1‑148 (MQ=255)                                                                  gtgtGATCCTGTTCCAGTCGGCGTACTTCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCt                                                                                    >  5:58966/1‑145 (MQ=255)                                                                  gtgtGATCCTGTTCCAGTCGGCGTACTTCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCt                                                                                    <  6:58966/145‑1 (MQ=255)                                                                  gtgtGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAg                                                                                >  4:94504/1‑149 (MQ=255)                                                                       aTCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTtgt                                                                           <  5:145607/149‑1 (MQ=255)                                                                       aTCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTtg                                                                            <  3:237244/148‑1 (MQ=255)                                                                        tCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCATGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTtgt                                                                           >  7:23554/1‑148 (MQ=255)                                                                                cAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCTGGCGCTGAAGCTTGTGATCCCCg                                                                   <  4:298223/148‑1 (MQ=255)                                                                                cAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCgg                                                                  >  8:139607/1‑149 (MQ=255)                                                                                cAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCATGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCg                                                                   <  8:23554/148‑1 (MQ=255)                                                                                 aGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTg                                                                                                                               >  8:156960/1‑87 (MQ=255)                                                                                 aGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTg                                                                                                                               <  7:156960/87‑1 (MQ=255)                                                                                   tCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCAt                                                               >  2:50118/1‑149 (MQ=255)                                                                                       cGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTc                                                           <  3:94504/149‑1 (MQ=255)                                                                                            aTCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAacac                                                      >  4:43047/1‑149 (MQ=255)                                                                                                        gtgCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCt                                          >  1:113876/1‑149 (MQ=255)                                                                                                           cgcgGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGtt                                       <  4:140950/149‑1 (MQ=255)                                                                                                            gggatggcCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGtt                                       >  3:190555/6‑148 (MQ=255)                                                                                                             cggcggCCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgcgcaccacctcggcgatgtacgccgactgggacaggatcacaccgatcatcgcccgcagcagcttgtcgaagctcatgccttctggcaggaacaacggcagcat                                      <  1:177960‑M2/148‑112 (MQ=255)                                                                                                              ggcggcCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgcgcaccacctcggcgatgtacgccgactggaacaggatcacaccgatcatcgcccgcagcagcttgtcgaagctcatgccttctggca                                                      >  7:127023‑M2/1‑36 (MQ=255)                                                                                                              ggcggcCTGCAGGCCATCCCCAAGGGCCAGTACGAAgccgccgcgcaccacctcggcgatgtacgccgactggaacaggatcacaccgatcatcgcccgcagcagcttgtcgaagctcatgccttctggca                                                      <  8:127023‑M2/131‑96 (MQ=255)                                                                                                              ggcggcCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCaa                                    <  2:113876/149‑1 (MQ=255)                                                                                                                    cTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTg                                                                                                                               >  7:55389/1‑52 (MQ=255)                                                                                                                    cTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTg                                                                                                                               <  8:55389/52‑1 (MQ=255)                                                                                                                       cAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCa                            <  2:201456/148‑1 (MQ=255)                                                                                                                           ccATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCAGGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTg                       <  2:86298/149‑1 (MQ=255)                                                                                                                            cATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTgg                      <  3:43047/149‑1 (MQ=255)                                                                                                                                         cAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGAGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAATGACACCAGCCTGGTGATCATCATCgg         >  3:69315/1‑149 (MQ=255)                                                                                                                                         cAGTACGAAGCCGCCGCGGCCATGGCCCTTGGCTACTGCCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCGGCCTGGTGATCATCATCgg         >  6:129393/1‑149 (MQ=255)                                                                                                                                             aCGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTg     >  3:298825/1‑149 (MQ=255)                                                                                                                                              cGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCCGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTGt    >  8:213417/1‑149 (MQ=255)                                                                                                                                                aaGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTGTTc  >  3:87801/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GGTGATGCTGCCGTTGTTCCTGCCAGAAGGCATGAGCTTCGACAAGCTGCTGCGGGCGATGATCGGTGTGATCCTGTTCCAGTCGGCGTACATCGCCGAGGTGGTGCGCGGCGGCCTGCAGGCCATCCCCAAGGGCCAGTACGAAGCCGCCGCGGCCATGGGCCTTGGCTACTGGCGCTCGATGGGGCTGGTGATCTTGCCGCAGGCGCTGAAGCTTGTGATCCCCGGCATCGTCAACACCTTCATTGCCCTGTTCAAGGACACCAGCCTGGTGATCATCATCGGCCTGTTC  >  NC_002947/1485753‑1486044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.