New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1548872	50 (1.020)	4 (0.090)	4/250	NT	7.9%	coding (319/462 nt)	PP_1359	membrane protein
	?	NC_002947	= 1548903	45 (0.960)					coding (350/462 nt)	PP_1359	membrane protein

CATGTTCCAGGGCATGATGCTGGCCGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCAAGCGGCCCCGGTTTTTT  >  NC_002947/1548763‑1549051                                                                                                                                              |                                                                                                                                                     cATGTTCCAGGGCATGATGCTGGCCGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCa                                                                                                                                              <  3:85115/149‑1 (MQ=255)  aTGTTCCAGGGCATGATGCTGGCCGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCAt                                                                                                                                             <  4:10203/149‑1 (MQ=255)    gTTCCAGGGCATGATGCTGGCCGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATgc                                                                                                                                           >  1:35556/1‑149 (MQ=255)            gCATGATGCTGGCCGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGt                                                                                                                                   <  7:31966/149‑1 (MQ=255)                    cTGGGCGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTTCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGGGCGTGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCa                                                                                                                           <  3:122960/149‑1 (MQ=255)                      ggCCGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCACTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAg                                                                                                                          >  5:164338/1‑148 (MQ=255)                        ccGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCGTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGAt                                                                                                                       <  2:273168/149‑1 (MQ=255)                         cGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGAt                                                                                                                       >  1:111180/1‑148 (MQ=255)                         cGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATg                                                                                                                      <  2:35556/149‑1 (MQ=255)                            gggCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGGGCTGGGTGTGCT‑GTGCCGGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGAcc                                                                                                                   >  8:163722/1‑149 (MQ=255)                                 gTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTc                                                                                                              <  8:39447/149‑1 (MQ=255)                                     ccTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGt                                                                                                                                   <  8:110578/124‑1 (MQ=255)                                     ccTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGt                                                                                                                                   >  7:110578/1‑124 (MQ=255)                                        gttgttGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGgcg                                                                                                        >  2:287831/1‑148 (MQ=255)                                         ttgttgCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGgcg                                                                                                        <  2:109042/147‑1 (MQ=255)                                                  cccGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGa                                                                                             >  1:309367/1‑149 (MQ=255)                                                   ccGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCAACGTGAt                                                                                            >  1:105245/1‑149 (MQ=255)                                                    cGGCTTCATCAGCGACGTGCTGGGTGTGCTCGTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGTGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGAt                                                                                            >  1:27346/1‑149 (MQ=255)                                                    cGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATg                                                                                           >  8:11771/1‑149 (MQ=255)                                                        ttCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATggcgg                                                                                       >  4:79992/1‑149 (MQ=255)                                                            tcaGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCAc                                                                                   >  4:173567/1‑149 (MQ=255)                                                                   cGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGa                                                                            <  4:168061/149‑1 (MQ=255)                                                                          ggTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGAc                                                                                                                    >  2:150353/1‑102 (MQ=255)                                                                              tgct‑gtgcCGGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGaa                                                                 <  8:261645/149‑1 (MQ=255)                                                                               gct‑gtgcCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGTGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAg                                                                <  2:27346/149‑1 (MQ=255)                                                                                    tgcCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGc                                                              <  2:309367/147‑1 (MQ=255)                                                                                        tgctgcCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTAc                                                        >  8:233723/1‑149 (MQ=255)                                                                                         gctgcCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTAc                                                        >  6:170342/1‑148 (MQ=255)                                                                                           tgcCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATc                                                                    <  3:237914/134‑1 (MQ=255)                                                                                           tgcCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATc                                                                    >  4:237914/1‑134 (MQ=255)                                                                                               actCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGcgcc                                                 <  6:164338/147‑1 (MQ=255)                                                                                                ttCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGCGcgccg                                                >  5:103143/1‑149 (MQ=255)                                                                                                ttCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGcgccg                                                <  1:287831/149‑1 (MQ=255)                                                                                                  cACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCccaggcggcgggtgaatggcagcaggcacagcacacccagcacgtcgctgatgaagccgggcagcaacaacaggccaccgcccacggccagcatcatgccctg                                               <  5:278016‑M2/148‑104 (MQ=255)                                                                                                   aCCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGa                                             <  5:170342/149‑1 (MQ=255)                                                                                                      cgccgcCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACaa                                          <  3:79992/149‑1 (MQ=255)                                                                                                      cgccgcCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACaa                                          <  7:163722/149‑1 (MQ=255)                                                                                                        ccgccTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCccaggcggcgggtgaatggcagcaggcacagcacacccagcacgtcgctgatgaagccgggcagcaacaacaggccaccgcccacggccagcatcatgccctggaacatg                                        <  3:266151‑M2/149‑111 (MQ=255)                                                                                                            cTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTaaga                                    <  7:233723/149‑1 (MQ=255)                                                                                                               gcggcgCGCAAGATGCGCGAGCGTGCCG‑‑‑caggcggcgggtgaatggcagcaggcacagcacacccagcacgtcgctgatgaagccgggcagcaacaacaggccaccgcccacggccagcatcatgccctggaacatgtcctcggcggg                               <  2:61533‑M2/149‑121 (MQ=255)                                                                                                                 ggcgCGCAAGATGCGCGAGCGTGCCGAGGCccaggcggcgggtgaatggcagcaggcacagcacacccagcacgtcgctgatgaagccgggcagcaacaacaggccaccgcccacggccagcatcatgccctggaacatgtcctcggcg                               >  4:266151‑M2/1‑30 (MQ=255)                                                                                                                       cAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGc                         >  1:68916/1‑149 (MQ=255)                                                                                                                        aaGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGcc                        >  7:260763/1‑149 (MQ=255)                                                                                                                          gATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCcgc                      >  3:97251/1‑149 (MQ=255)                                                                                                                             gcgcGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCgcgc                    >  2:137387/1‑148 (MQ=255)                                                                                                                              cgcgAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCaa                  <  2:111180/149‑1 (MQ=255)                                                                                                                               gcgAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCAAg                 >  3:14865/1‑149 (MQ=255)                                                                                                                                 gAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCAAGCg               >  3:160756/1‑149 (MQ=255)                                                                                                                                 gAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGAGCATTCAAGGATGACCCCTTCCAGGCGCAGCCGCCTGATGGCCGCCACCGCCAGAGCGTGATCGCAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCAAGCg               >  2:237903/1‑149 (MQ=255)                                                                                                                                  aGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCAAGCgg              >  3:42158/1‑149 (MQ=255)                                                                                                                                     gTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCAAGCGGccc           >  2:214517/1‑149 (MQ=255)                                                                                                                                         cGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCAAGCGGCCCCGGt       >  7:143509/1‑149 (MQ=255)                                                                                                                                              cccAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCAAGCGGCCCCGGtttttt  <  7:11771/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                     CATGTTCCAGGGCATGATGCTGGCCGTGGGCGGTGGCCTGTTGTTGCTGCCCGGCTTCATCAGCGACGTGCTGGGTGTGCT‑GTGCCTGCTGCCATTCACCCGCCGCCTGGCGGCGCGCAAGATGCGCGAGCGTGCCGAGGCCCAGGCCATGCGCCAGCGTGCATTCCAGGATGACCCCTTCCAGGCGCAGCCGCGTGATGGCGGCCACCGCCCGAACGTGATCGAAGGCGAGTACGAGCGCCGCGACAAGTAAGAAGGACCGGGGCCGCGCAAGCGGCCCCGGTTTTTT  >  NC_002947/1548763‑1549051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.