New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2529310	NA (NA)	10 (0.210)	8/256	NT	53.2%	coding (31/1302 nt)	PP_2218	transposase
	?	NC_002947	= 2869389	9 (0.180)					intergenic (+928/‑3)	PP_2520/PP_2522	hypothetical protein/transposase

GGGCTGTATGATGAGGCGGGGAATTTCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGC  >  NC_002947/2869245‑2869536                                                                                                                                                 |                                                                                                                                                    gggCTGTATGATGAGGCGGGGAATTTCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAAt                                                                                                                                                 <  3:211203/149‑1 (MQ=255)  ggCTGTATGATGAGGCGGGGAATTTCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATg                                                                                                                                                <  6:165989/149‑1 (MQ=255)     tGTATGATGAGGCGGGGAATTTCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGc                                                                                                                                              >  3:229529/1‑148 (MQ=255)           atgaGGCGGGGAATTTCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctc                                                                                                                                        <  3:240708‑M2/148‑14 (MQ=255)               ggCGGGGAATTTCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCt                                                                                                                                   >  4:254059/1‑149 (MQ=255)                   gggAATTTCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTg                                                                                                                                 >  6:313536/1‑147 (MQ=255)                        tttCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAgg                                                                                                                          <  4:205744/149‑1 (MQ=38)                          tCGCCTTCATGCTCATCGCTTTCAAGGACTTCGGTAGAAATCGCTGAAATCCAGTCAGGAAGACACGAGCGATGTGCGCTGATGTACTAGCGCCATTCGAGATAAAACCACCCGCCAGCGTAATGGCAAAAATTGCCTTGGAGCACGc                                                                                                                         >  4:247658/1‑148 (MQ=11)                          tCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGc                                                                                                                         >  5:154635/1‑148 (MQ=37)                              ccttacggccatccCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGtaatggcctgctccaaggcaagtttggccatta                                                                                                                    >  7:163138‑M2/7‑116 (MQ=255)                                  aGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccatggcaagtttggccattacgc                                                                                                                 >  4:240708‑M2/1‑112 (MQ=255)                                  aGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTgcgc                                                                                                                 <  4:191424/148‑1 (MQ=32)                                  aGGGCCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgc                                                                                                                 >  4:254490‑M2/1‑112 (MQ=255)                                    ggTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCg                                                                                                               >  7:113021/1‑148 (MQ=32)                                      tCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCAATTGCGCCGGAg                                                                                                            >  6:251953/1‑149 (MQ=11)                                                                    gCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctgg                                                                                                              <  4:160738‑M2/117‑40 (MQ=255)                                                                    gCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctgg                                                                                                              >  3:160738‑M2/1‑78 (MQ=255)                                                                        aaaTCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgct                                                                                                                <  7:292234‑M2/111‑38 (MQ=255)                                                                        aaaTCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgct                                                                                                                >  8:292234‑M2/1‑74 (MQ=255)                                                                          aTCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctg                                                                                                               >  6:194377‑M2/1‑72 (MQ=255)                                                                          aTCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGcaatggcctgctccaaggcaagtttggccattacgctg                                                                                                               <  5:194377‑M2/110‑39 (MQ=255)                                                                                                                                               gcgcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagcccttgaaagggatggccct    <  2:103948‑M2/148‑146 (MQ=255)                                                                                                                                               gcgcaatggcctgctccaaggcaagtttggccattacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccctt   >  2:181809‑M2/1‑3 (MQ=255)                                                                                                                                                cgcaatggcctgctccaaggcaagtttggccataacgctggcgggtgcttttttctcgaatcgcgctagtacatcagcccacatcgctcgggtcttcctgactggatttcagcgaattctaccgaagaccttgaaagggatggccctta  <  1:40674‑M2/149‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GGGCTGTATGATGAGGCGGGGAATTTCGCCTTCAGGGTCATCCCTTTCAAGGTCTTCGGTAGAATTCGCTGAAATCCAGTCAGGAAGACCCGAGCGATGTGGGCTGATGTACTAGCGCGATTCGAGAAAAAAGCACCCGCCAGCGTAATGGCCAAACTTGCCTTGGAGCAGGCCATTGCGCCGGAGTGGGTCGATCAGGTTTTCGAGGAGCACCGCCAACGGCAGTATTCTCGCGAGCTGCTGTTCTCGACCATTATCAAGTTGATGTCGCTTGTTTCATTGGGCTTGAAGC  >  NC_002947/2869245‑2869536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.