New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2600997 =	53 (1.080)	4 (0.090)	4/246	NT	8.5%	coding (474/1575 nt)	PP_2279	head‑to‑tail joining protein
	?	NC_002947	2601059 =	36 (0.780)					coding (536/1575 nt)	PP_2279	head‑to‑tail joining protein

TTGAGTTGCTCAAGCATTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGATCTACACCCACATCACCCTCAAGGGTGAGACCTGGAACGTG  >  NC_002947/2600918‑2601201                                                                                                                                               |                                                                                                                                                ttGAGTTGCTCAAGCATTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGtc                                                                                                                                          >  5:76612/1‑149 (MQ=255) ttGAGTTGCTCAAGCATTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGt                                                                                                                                           <  4:90199/148‑1 (MQ=255) ttGAGTTGCTCAAGCATTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGt                                                                                                                                           <  2:225082/148‑1 (MQ=255)    aGTTGCTCAAGCATTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTcc                                                                                                                                       >  6:76793/1‑149 (MQ=255)     gTTGCTCAAGCATTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTcc‑c                                                                                                                                     >  4:280140/1‑149 (MQ=255)          tCAAGCATTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCg                                                                                                                                >  1:195462/1‑149 (MQ=255)           cAAGCATTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCgg                                                                                                                               >  7:55979/1‑149 (MQ=255)                aTTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCCTCTGGCAGTAcc                                                                                                                           >  1:33444/1‑148 (MQ=255)                    gATTGTTGGCGGCAACGGCCTTGTGTGACCTGCCCCAGCAGGGAGGAATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCa                                                                                                                       >  1:2426/1‑149 (MQ=255)                     aTTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCaga                                                                                                                     <  7:182710/149‑1 (MQ=255)                       tgttgGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCagag                                                                                                                    >  7:34238/1‑148 (MQ=255)                       tgttgGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCagag                                                                                                                    <  6:76612/148‑1 (MQ=255)                       tcgccaggctcgactaatgaccgggcctcctctggcagtaccgccagggagacctcctCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAaggagga                                                                                                                                              <  8:144538‑M1/66‑1 (MQ=255)                       tcgccaggctcgactaatgaccgggcctcctctggcagtaccgccagggagacctcctCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAaggagga                                                                                                                                              >  7:144538‑M1/59‑124 (MQ=255)                         ttgGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAgaggag                                                                                                                 >  2:90443/1‑149 (MQ=255)                         ttgGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAgagga                                                                                                                  <  7:76072/148‑1 (MQ=255)                         ttgGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAgagga                                                                                                                  <  3:138965/148‑1 (MQ=255)                          tgGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAgaggag                                                                                                                 <  8:55979/148‑1 (MQ=255)                            gcggcAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCCTCTGGCAGTACCGCCagggagacc                                                                                                               <  2:33444/149‑8 (MQ=255)                            gcggcAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCCTCTGGCAGTACCGCCagggagacc                                                                                                               <  8:109575/149‑8 (MQ=255)                            gcggcAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGcc                                                                                                              <  3:280140/149‑1 (MQ=255)                                         tgtgT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGTTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTc                                                                                                  >  8:210874/1‑148 (MQ=255)                                          gtgt‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTc                                                                                                  >  4:151682/1‑147 (MQ=255)                                             t‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTcatcgc                                                                                             >  6:214650/1‑144 (MQ=255)                                                ccTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTg                                                                                           <  3:151682/149‑1 (MQ=255)                                                ccTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATAGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTg                                                                                           >  2:4846/1‑149 (MQ=255)                                                             ggcggcATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCgg                                                                              <  8:34238/149‑1 (MQ=255)                                                                           cTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCga                                                                 <  8:280375/148‑1 (MQ=255)                                                                           cTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCga                                                                 <  1:4846/148‑1 (MQ=255)                                                                             tcctccttgaccacgatgtccaggacgttgcccattgggtcacgccggaccacgtagcggtcaaggAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGa                                                                                       <  8:144538‑M2/58‑1 (MQ=255)                                                                             tcctccttgaccacgatgtccaggacgttgcccattgggtcacgccggaccacgtagcggtcaaggAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGa                                                                                       >  7:144538‑M2/67‑124 (MQ=255)                                                                              cccccTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGAc                                                              <  2:195462/148‑1 (MQ=255)                                                                               ccccTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCa                                                            >  8:139918/1‑149 (MQ=255)                                                                                   TTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATaa                                                         <  2:212513‑M1/148‑1 (MQ=255)                                                                                      tCCGCTACGTGGTCCGGCGTGTCCCAATGGGCAACGTGCTGGACATCGTGGTTAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGGCATTACTCGTGCCTTGCGATTACTCCGGCGACAACCCCCGAGACCATAACaa                                                      >  2:2426‑M1/2‑148 (MQ=255)                                                                                      accacgatgtccaggacgttgcccattgggtcacgccggaccacgtagcggtcaaggAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAAc                                                        >  1:19469‑M2/58‑146 (MQ=255)                                                                                      accacgatgtccaggacgttgcccattgggtcacgccggaccacgtagcggtcaaggAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAg                                                     <  2:19469‑M2/92‑1 (MQ=255)                                                                                       CCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGcc                                                                                             <  5:96906‑M1/108‑1 (MQ=255)                                                                                       CCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGcc                                                                                             >  6:96906‑M1/1‑108 (MQ=255)                                                                                              gTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATaa                                                         >  4:184632/1‑137 (MQ=255)                                                                                                 gTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGAt                                          <  7:139918/149‑1 (MQ=255)                                                                                                    cGGCGTTTCCCAATTGGCAACGTCCTGGACATCTTTGTCAAGGAGGATGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTATTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGATCt                                        <  5:76793/148‑1 (MQ=255)                                                                                                              cAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGATCTACACCCACAt                              >  2:15611/1‑148 (MQ=255)                                                                                                                            cTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGATCTACACCCACATCACCCTCACggtt                 >  2:98805/1‑145 (MQ=255)                                                                                                                            cTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGATCTACACCCACATCACCCTCAAGGGTg                <  1:212513/148‑1 (MQ=255)                                                                                                                                 cATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGATCTACACCCACATCACCCTTGAGGGTgatgtgg          <  1:73980/149‑6 (MQ=255)                                                                                                                                  aTCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGATCTACACCCACATCACCCTCAAGGGTGAGACCTg         <  1:90443/149‑1 (MQ=255)                                                                                                                                    ggTGGTCTAGGTGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCGTGGCGATGAGTCCGGCGACACCCCCCGAGTACATTACAAGAACGTCTCGATCTACACCCACATCAGCCTTGAGGGTgatgtgg          <  7:106800/145‑6 (MQ=255)                                                                                                                                         tcaaggAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGATCTACACCCACATCACCCTCAAGGGTGAGACCTGGAACgtg  <  1:15611‑M2/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                TTGAGTTGCTCAAGCATTTGATTGTTGGCGGCAACGGCCTTGTGT‑ACCTGCCCCAGCAGGGCGGCATGAAGTTCTACCCCCTTGACCGCTACGTGGTCCGGCGTGACCCAATGGGCAACGTCCTGGACATCGTGGTCAAGGAGGAGGTCTCC‑CTGGCGGTACTGCCAGAGGAGGCCCGGTCATTAGTCGAGCCTGGCGATGACTCCGGCGACACCCCCCGAGACCATAACAAGAACGTCTCGATCTACACCCACATCACCCTCAAGGGTGAGACCTGGAACGTG  >  NC_002947/2600918‑2601201

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.