New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2839904	61 (1.250)	3 (0.070)	3/246	NT	5.5%	coding (678/678 nt)	PP_2491	ThiJ/PfpI family protein
	?	NC_002947	= 2839944	45 (0.980)					coding (638/678 nt)	PP_2491	ThiJ/PfpI family protein

TGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTGGGTCAGGCC  >  NC_002947/2839800‑2840080                                                                                                                                                 |                                                                                                                                         tGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGagga                                                                                                                                      >  2:113408‑M2/1‑145 (MQ=255) tGCCATTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACCTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGATGAGCAGCGCGTGGGCGGTGGCTTCGGag                                                                                                                                        <  7:201730‑M2/147‑3 (MQ=255)   cccTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggag                                                                                                                                     >  3:276977‑M2/1‑143 (MQ=255)           gTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCggg                                                                                                                               <  6:124581/146‑1 (MQ=255)           gTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCggg                                                                                                                               <  3:85693/146‑1 (MQ=255)           gTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTc                                                                                                                            >  1:206864/1‑149 (MQ=255)            tGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCt                                                                                                                           <  1:115443/149‑1 (MQ=255)             gCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTg                                                                                                                          >  5:33703/1‑149 (MQ=255)               ggCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGc                                                                                                                        <  8:43456/149‑1 (MQ=255)                gCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGcc                                                                                                                       >  3:136201/1‑149 (MQ=255)                 cAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTAGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGccc                                                                                                                      >  5:61162/1‑149 (MQ=255)                      ggctcctGCGCGTTACGGTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGAt                                                                                                                 <  8:201730/147‑1 (MQ=255)                       cctcctGCGCGTAACGTTGCAGTTCAGCAGCGTCTGTTGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTAAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATc                                                                                                                <  6:61162/149‑1 (MQ=255)                        ctcctGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATca                                                                                                               <  7:212201/149‑1 (MQ=255)                           ctGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATcag                                                                                                              <  1:275980/147‑1 (MQ=255)                            tGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGt                                                                                                                    <  3:288800/140‑1 (MQ=255)                            tGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGt                                                                                                                    >  4:288800/1‑140 (MQ=255)                                 gTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAAACACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCg                                                                                                       >  5:45671/1‑148 (MQ=255)                                  tAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTc                                                                                                     <  4:253168/149‑1 (MQ=255)                                         gCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGtgat                                                                                               <  6:187183/148‑1 (MQ=255)                                            gTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACa                                                                                           <  2:154955/149‑1 (MQ=255)                                                agcagcGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTa                                                                                       >  3:223951/1‑149 (MQ=255)                                                 gcagcGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTc                                                                                                     <  2:157114/134‑1 (MQ=255)                                                  cagcGTCGGTGGTGTTCTCGCTTTTTATAACCTCTTATGAGGTCATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTTGGCGTTGGATTCGGAGGAGTCCGGTTTCTGGCCCGTGTTCAGCAGCCCGTCTGTGATGACATGt                                                                                        <  4:162408/146‑1 (MQ=255)                                                    gcGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTg                                                                                   <  7:229165/149‑1 (MQ=255)                                                     cGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCTGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGc                                                                                  <  1:72753/149‑1 (MQ=255)                                                      gTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGcc                                                                                 <  1:262482/149‑1 (MQ=255)                                                       tCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGc                                                                                  >  3:215449/1‑147 (MQ=255)                                                       tCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCa                                                                                >  7:18810/1‑149 (MQ=255)                                                        cGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAg                                                                               >  3:9147/1‑149 (MQ=255)                                                              tgtgCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTcggcg                                                                         <  3:99725/149‑1 (MQ=255)                                                                     gcgGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGGAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTg                                                                   <  2:206864/148‑1 (MQ=255)                                                                      cgGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCt                                                                 <  4:215449/149‑1 (MQ=255)                                                                      cgGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCt                                                                 <  4:223951/149‑1 (MQ=255)                                                                         gTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTg                                                                >  5:238011/1‑147 (MQ=255)                                                                             aaaCCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTgg                                                          <  4:136201/149‑1 (MQ=255)                                                                                 cACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCa                                                                                <  8:242879/123‑1 (MQ=255)                                                                                 cACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCa                                                                                >  7:242879/1‑123 (MQ=255)                                                                                    gTAGGCGGACATCGGGACTCCTTAGCTCAGCACGTTGAGCTGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTTCTGTAGTGGCCGCCCt                                                   <  6:45671/149‑1 (MQ=255)                                                                                         cGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGcc                                              <  6:33703/149‑1 (MQ=255)                                                                                            aCATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTg                                           <  5:282127/149‑1 (MQ=255)                                                                                              aTCGGGCCTCCTTAGCTCAGCTCGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGAGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTGAg                                         <  4:9147/149‑1 (MQ=255)                                                                                               tCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTGAGc                                        <  2:291816/149‑1 (MQ=255)                                                                                                 gggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaacgttacgcgcaggaggcgcctgccgcacgag                                        <  4:265358‑M2/147‑99 (MQ=255)                                                                                                  ggCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaacgttacgcgcaggaggcgcctgccgcacgagaag                                     <  1:57385‑M2/149‑102 (MQ=255)                                                                                                   gCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGa                                                 >  5:306641/1‑136 (MQ=255)                                                                                                   gCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGa                                                 <  6:306641/136‑1 (MQ=255)                                                                                                        ctTAGCTCAGCACGTTGAGCAGCGCGTGTGCGGTGGCTTCGGAGTAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTGAGCATGTGCTc                                <  8:18810/148‑1 (MQ=255)                                                                                                           aGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGAc                             <  3:50655/148‑1 (MQ=255)                                                                                                                aGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGaggaggcccgatgtccgcctacgtggttttcacccgcgagcacaccaccgacgctgctgaactgcaacgttacgcgcaggaggcgcctgccgcacgagaagggcacgacgtcac                        >  3:265358‑M2/1‑34 (MQ=255)                                                                                                                aGCACGTTGAGCAGCGCGTGGGCGGGGGCTGCGGAGGAGGCCGGGGTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCACTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAgg                         <  6:238011/147‑1 (MQ=255)                                                                                                                 gCACGTTGAGCAGCGCGTGGGCGGTGGCTTCAGAGGAGGCCCGGTTCTCGCCCGTGATCAGCAGCCCGTCCGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAAc                      >  1:30790/1‑149 (MQ=255)                                                                                                                                     gCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCA‑CACCTGGGTCAGGcc  >  8:37193/1‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                         TGCCCTTCTCGTGCGGCAGGCGCCTCCTGCGCGTAACGTTGCAGTTCAGCAGCGTCGGTGGTGTGCTCGCGGGTGAAAACCACGTAGGCGGACATCGGGCCTCCTTAGCTCAGCACGTTGAGCAGCGCGTGGGCGGTGGCTTCGGAGGAGGCCGGGTTCTGGCCCGTGATCAGCAGCCCGTCGGTGATGACATGTACCTGCCAGTCGGCGGTCTTGCTGTAGTGGCCGCCCTGAGCCTTGAGCATGTCCTCGACCAGGAACGGCACCACCTGGGTCAGGCC  >  NC_002947/2839800‑2840080

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.