New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 2987692 =NA (NA)5 (0.110) 5/254 NT NA coding (707/2991 nt) PP_2612 membrane protein
?NC_002947 2987745 = NA (NA)coding (654/2991 nt) PP_2612 membrane protein

TCGGCTGGGTCCAGGGGTAGTGCCGGGCGATGGCATGGAGGTTGCCGATGGGCAAGGTTTCGGTGACCGGGTCGCTGCTCCAGGTCAGCGGCATGCGCCGCTCGGTTGGCTTGAAGTCTTCGACCCAGGTTTGCAGGGCACTCACTGG  >  NC_002947/2987711‑2987858
                                  |                                                                                                                 
tctgCTGGGTCCAGGGGTAGTGCCGGGCGATGGCATGGAGGTTGCCGATGGGCAAGGTTTCGGTGACCGGGTCGCTGCTCCAGGTCAGCGGCATGCGCCGCTCGGTTGGCTTGAAGTCTTCGACCCAGGTTTGCAGGGCACTCACTgg  <  4:217147/145‑1 (MQ=1)
                                  |                                                                                                                 
TCGGCTGGGTCCAGGGGTAGTGCCGGGCGATGGCATGGAGGTTGCCGATGGGCAAGGTTTCGGTGACCGGGTCGCTGCTCCAGGTCAGCGGCATGCGCCGCTCGGTTGGCTTGAAGTCTTCGACCCAGGTTTGCAGGGCACTCACTGG  >  NC_002947/2987711‑2987858

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.