New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3214112 =	49 (1.000)	4 (0.080)	4/254	NT	8.4%	coding (27/3129 nt)	mexD	multidrug RND transporter MexD
	?	NC_002947	3214140 =	40 (0.840)					coding (55/3129 nt)	mexD	multidrug RND transporter MexD

GTCGGCAGCCCCGCAGGGTTGGCCCCCGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAA  >  NC_002947/3213996‑3214283                                                                                                                                                   |                                                                                                                                                gtcgGCAGCCCCGCAGGGTTGGCCCCCGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCAttt                                                                                                                                              <  2:95575/148‑1 (MQ=255)  tcgGCAGCCCCGCAGGGTTGGCCCCCGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCa                                                                                                                                            <  5:110367/149‑1 (MQ=255)      cAGCCCCGCAGGGTTGGCCCCCGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTgg                                                                                                                                        >  5:58625/1‑149 (MQ=255)           ccGCAGGGTTGGCCCCCGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGACCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAAATTCGCCTGGGTCGTGGCGTTTTTAATTTCACTGGACGGt                                                                                                                                   >  7:211718/1‑149 (MQ=255)                 ggTTGGCCCCCGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCAAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTg                                                                                                                             >  1:88492/1‑149 (MQ=255)                    gccggggtaggaggcggtgatggagatctgcggtggcgccacgttggggtactgggccacgggcaaggatggaatcaccagcaaaccggccagtgaaatGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTg                                                                                                                                         >  1:107804‑M1/100‑136 (MQ=255)                    gccggggtaggaggcggtgatggagatctgcggtggcgccacgttggggtactgggccacgggcaaggatggaatcaccagcaaaccggccagtgaaatGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTg                                                                                                                                         <  2:107804‑M1/37‑1 (MQ=255)                     ggCCCCCGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGc                                                                                                                               <  1:1380/143‑1 (MQ=255)                     ggCCCCCGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGc                                                                                                                               >  2:1380/1‑143 (MQ=255)                           cGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCAt                                                                                                                   <  3:206025/149‑1 (MQ=255)                            ggTATGCCCGTTGCGCCTGCGCAGAATCAATCGTCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGGCGGTTTGCTGGTGATTCCATc                                                                                                                  <  2:286097/149‑1 (MQ=255)                                  cccGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATcc                                                                                                                 <  4:32488/144‑1 (MQ=255)                                  cccGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCtagat                                                                                                            >  3:32488/1‑145 (MQ=255)                                   ccGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGccc                                                                                                           <  2:88492/149‑1 (MQ=255)                                        gcgcCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGt                                                                                                                                   <  4:280965/120‑1 (MQ=255)                                        gcgcCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGt                                                                                                                                   >  3:280965/1‑120 (MQ=255)                                        gcgcCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTgg                                                                                                       <  2:102777/148‑1 (MQ=255)                                         cgcCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGcc                                                                                                     <  6:58625/149‑1 (MQ=255)                                          gcCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGcc                                                                                                     >  5:113347/1‑148 (MQ=255)                                            cTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTg                                                                                                                          >  8:185238/1‑125 (MQ=255)                                            cTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTg                                                                                                                          <  7:185238/125‑1 (MQ=255)                                                gcAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTgg                                                                                                                            >  2:77470/1‑119 (MQ=255)                                                gcAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTgg                                                                                                                            <  1:77470/119‑1 (MQ=255)                                                  aGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCCAGATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCAGTGGCCGGTTTGATGGTGATTCCATCCTTGCCCTTGGCCCAGTccc                                                                                              >  1:242372/1‑149 (MQ=255)                                                  aGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTAccc                                                                                             >  7:228088/1‑148 (MQ=255)                                                          acGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGgc                                                                                    <  4:80377/149‑1 (MQ=255)                                                             cgttggggtactgggccacgggcaaggatggaatcaccagcaaaccggccagtgaaatgaacttcgcctgggtcgtggcgttgttcATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGcc                                                                                                            <  3:213960‑M2/38‑1 (MQ=255)                                                             cgttggggtactgggccacgggcaaggatggaatcaccagcaaaccggccagtgaaatgaacttcgcctgggtcgtggcgttgttcATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGcc                                                                                                            >  4:213960‑M2/87‑124 (MQ=255)                                                               tGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCAc                                                                               >  2:98315/1‑149 (MQ=255)                                                                    cccAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCTGTACCCCAACGTGGCGCCACCGCAg                                                                          <  8:228088/149‑1 (MQ=255)                                                                    cccAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCa                                                                                <  6:94928/143‑1 (MQ=255)                                                                    cccAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCa                                                                                >  5:94928/1‑143 (MQ=255)                                                                         tGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGAtctc                                                                     <  6:46587/149‑1 (MQ=255)                                                                                aGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCAcc                                                              >  2:63749/1‑149 (MQ=255)                                                                                 ggcaaggatggaatcaccagcaaaccggccagtgaaatGAACAACGCCACGACCCAGGCGAAGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACg                                                                                        <  3:213960‑M1/86‑1 (MQ=255)                                                                                 ggcaaggatggaatcaccagcaaaccggccagtgaaatGAACAACGCCACGACCCAGGCGAAGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACg                                                                                        >  4:213960‑M1/39‑124 (MQ=255)                                                                                     aGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGcctc                                                         <  1:63749/149‑1 (MQ=255)                                                                                                cAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGgcg                                              >  3:285592/1‑149 (MQ=255)                                                                                                    ttcttcATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTc                                          >  7:30219/1‑149 (MQ=255)                                                                                                          atcc‑‑atcGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCtt                                                                                                               <  7:83621/74‑1 (MQ=255)                                                                                                          atcc‑‑atcGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCtt                                                                                                               >  8:83621/1‑74 (MQ=255)                                                                                                          atcc‑‑atcGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCaa                                    <  6:113347/149‑1 (MQ=255)                                                                                                           tcc‑‑atcGCCCGTACTTGGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAg                                   <  7:134678/149‑1 (MQ=255)                                                                                                           tcc‑‑atcGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAg                                   >  7:217820/1‑149 (MQ=255)                                                                                                              cagtgaaatgaacaacgccacgacccaggcgaagttcATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGgc                                               <  2:107804‑M2/99‑1 (MQ=255)                                                                                                              cagtgaaatgaacaacgccacgacccaggcgaagttcATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGgc                                               >  1:107804‑M2/38‑136 (MQ=255)                                                                                                                   gCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGTTTGTATCCTTGCTGTTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCAt                              <  1:98315/148‑1 (MQ=255)                                                                                                                    cccGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCAtgg                            <  1:88882/149‑1 (MQ=255)                                                                                                                               ccTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGt                  >  7:37486/1‑148 (MQ=255)                                                                                                                                           cGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCatcatc     <  8:37486/149‑1 (MQ=255)                                                                                                                                            gttgttCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCatcatc     >  8:4708/1‑148 (MQ=255)                                                                                                                                               gttcATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGaa  <  7:4708‑M2/144‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                GTCGGCAGCCCCGCAGGGTTGGCCCCCGGTATGCCCGTTGCGCCTGCGCAGAAACAAACGGCTGCCGCCCAGTGATGCGAGGGAAGTGAGATGTCCAGGTTCTTCATCC‑‑ATCGCCCGAACTTCGCCTGGGTCGTGGCGTTGTTCATTTCACTGGCCGGTTTGCTGGTGATTCCATCCTTGCCCGTGGCCCAGTACCCCAACGTGGCGCCACCGCAGATCTCCATCACCGCCTCCTACCCCGGCGCTTCGGCCAAGGTCATGGTGGAGTCGGTGACCAGCATCATCGAA  >  NC_002947/3213996‑3214283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.