New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3437048 = | 56 (1.140) | 3 (0.070) | 3/242 | NT | 6.0% | coding (174/879 nt) | PP_3056 | tail fiber protein |
? | NC_002947 | 3437092 = | 42 (0.930) | coding (218/879 nt) | PP_3056 | tail fiber protein |
GGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATACCGACTTGCTGTTGGCCTACGACCT > NC_002947/3436945‑3437233 | gggtttCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATc > 8:80812/4‑149 (MQ=255) tGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATg > 2:187759/1‑149 (MQ=255) ccGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGc < 2:241605/149‑1 (MQ=255) ccGAGATAACACACATCGCGCTCGCTACGTCCGGTTACACCCCTACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCAAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGACTGATTAACCTCACCGACATCGCAGATCGc > 2:126826/1‑149 (MQ=255) cccACTTCGTGTTTGTTACGTCGGTTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCcgc < 8:44668/148‑1 (MQ=255) ccACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGt > 6:262872/1‑149 (MQ=255) ccACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGt > 7:127713/1‑149 (MQ=255) aTCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTg > 2:303719/1‑149 (MQ=255) gTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGAACGCCTGATTCACCTCACCGCCAGCGCTGATGGCCCGTCCGCGTTCTGGGTGCGTGAAATCg > 6:216641/1‑149 (MQ=255) tCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATctg < 7:48853/149‑3 (MQ=255) gTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCttt < 5:154352/149‑1 (MQ=255) gTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCttt > 2:93898/1‑149 (MQ=255) gtaacccGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTg > 3:210352/5‑149 (MQ=255) ccccGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTa < 8:127713/149‑1 (MQ=255) cccaGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTACTGGGTGCGTGAAATCGGCTTTCTGTTa < 1:175376/149‑1 (MQ=255) cccGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAg > 4:18711/1‑149 (MQ=255) ccGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGc < 4:210352/149‑1 (MQ=255) ccGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGc < 8:278640/149‑1 (MQ=255) aaCGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATgg > 2:225866/1‑149 (MQ=255) aaCGAGCAAACCAGCTTGCGCGCCCAGGTGGACAAGTATCCCATTGCTGGCGGTGAGCGGCTGATTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCTTGAAATCTGCTTTCTGTTATCAGAtt > 8:91126/1‑147 (MQ=255) aaaCCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTg > 3:258286/1‑149 (MQ=255) gcgcgcCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGtt < 6:194706/148‑1 (MQ=255) gcgcgcCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGtt < 3:18711/148‑1 (MQ=255) gcgcgcCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGtt < 1:225866/148‑1 (MQ=255) cgcgcCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGttt < 4:139761/148‑1 (MQ=255) cgcCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGtt < 3:277937/138‑1 (MQ=255) cgcCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGACGATGGCACGCTGtt > 4:277937/1‑138 (MQ=255) gcCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTc < 3:204877/149‑1 (MQ=255) ccAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGc < 1:93898/149‑1 (MQ=255) aGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCAt < 1:120176/149‑1 (MQ=255) gCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGAc < 5:267935/149‑1 (MQ=255) gCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCACATGCGa < 6:188725/148‑1 (MQ=255) cATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGa > 4:166617/1‑149 (MQ=255) cATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGa > 3:239233/1‑149 (MQ=255) cTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTAc < 7:80812/149‑1 (MQ=255) TGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTAc < 1:140061‑M1/148‑1 (MQ=255) TGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTAc < 1:90974‑M1/148‑1 (MQ=255) gcggtgaggtgaatcaggctgtcactcagccgctcaccgccaTCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAg > 3:249436‑M2/43‑149 (MQ=255) GCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAg < 4:218758‑M1/149‑1 (MQ=255) cggtgaggtgaatcaggctgtcactcagccgctcaccgccaTCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGtt < 2:142556‑M2/67‑1 (MQ=255) cggtgaggtgaatcaggctgtcactcagccgctcaccgccaTCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGtt > 1:142556‑M2/42‑108 (MQ=255) GGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGcc < 8:258596‑M1/149‑1 (MQ=255) TGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACg < 2:47760‑M1/131‑1 (MQ=255) TGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACg > 1:47760‑M1/1‑131 (MQ=255) TGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCgg > 1:303719‑M1/1‑149 (MQ=255) GAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGccgtc > 2:157537‑M1/1‑147 (MQ=255) AGCGGCTTAGTGACAGACTGATTCACCTCACCGCCATCGCTTATGGCCCTGCCGCGTTCTGGGTGTGTGAAATGTGCTTTCTGTTAGCCGATGGCACGCTGTTGGGGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGc > 1:126826‑M1/1‑148 (MQ=255) gCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCGCGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATa > 5:101964/1‑149 (MQ=255) cTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGa < 2:32/118‑1 (MQ=255) aGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTTTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATAcc < 4:258286/147‑1 (MQ=255) aGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATACCGa > 4:79489/1‑149 (MQ=255) gTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGCCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATACCGAc < 5:262872/149‑1 (MQ=255) tGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATACCGACt > 4:165166/1‑149 (MQ=255) ccTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATAc > 7:238286/1‑138 (MQ=255) ccTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATAc < 8:238286/138‑1 (MQ=255) tcacctcaccGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATACCGACTTGCTGTTGGcc > 5:235146/1‑148 (MQ=255) acctcaccGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATACCGACTTGCTGTTGGCCTAc > 3:286286/1‑149 (MQ=255) ctcaccgccaTCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGCTGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGCCCTACAAGCCGCCCAAGACCGACTTGCTGATGGCCTACGa > 7:212286‑M2/11‑149 (MQ=255) caccgccaTCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATACCGACTTGCTGTTGGCCTACGAcc < 4:239233‑M2/141‑1 (MQ=255) accgccaTCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATACCGACTTGCTGTTGGCCTACGACCt < 3:166617‑M2/142‑1 (MQ=255) | GGCTTTCTGCCGAGATCACCCACATCGCGCTCGGTACGTCGGGTTACACCCCGACCAACGAGCAAACCAGCTTGCGCGCCCAGGTGGCCAAGTATCCCATTGCTGGCGGTGAGCGGCTGAGTGACAGCCTGATTCACCTCACCGCCATCGCTGATGGCCCGGCCGCGTTCTGGGTGCGTGAAATCGGCTTTCTGTTAGCCGATGGCACGCTGTTGGCGGTTTGGTCGCATGCGACTGACGCTCTGACCTACAAGCCGGCCAATACCGACTTGCTGTTGGCCTACGACCT > NC_002947/3436945‑3437233 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |