New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3586143 =	34 (0.690)	3 (0.060)	3/250	NT	8.3%	coding (337/1329 nt)	benK	benzoate MFS transporter
	?	NC_002947	3586190 =	34 (0.730)					coding (384/1329 nt)	benK	benzoate MFS transporter

GGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTCGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCATCTTCATGCTGCCGCGTTTTGGCTGGGAGTCGATG  >  NC_002947/3586043‑3586337                                                                                                                                                    |                                                                                                                                                    cgacagcatgccgcccagcgaataaccactgaacatgatcgccaccagcgtgctgcgcaggcgcttgggtgcgtattcgttcatcagtgccacggcgttgGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGccc                                                                                                                                                     <  4:23193‑M1/48‑1 (MQ=255)  gacagcatgccgcccagcgaataaccactgaacatgatcgccaccagcgtgctgcgcaggcgcttgggtgcgtattcgttcatcagtgccacggcgttgGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCaa                                                                                                                                                   >  3:23193‑M1/100‑149 (MQ=255)     agcatgccgcccagcgaataaccactgaacatgatcgccaccagcgtgctgcgcaggcgcttgggtgcgtattcgttcatcagtgccacggcgttgGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGc                                                                                                                                                >  6:147096‑M1/97‑149 (MQ=255)         gCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTCGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGTGCTGTGGCGGCCTGATGCCCAACGCCGTg                                                                                                                                            <  1:178737/149‑1 (MQ=255)         gCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTCGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTg                                                                                                                                            <  5:299442/149‑1 (MQ=255)              gggCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTCGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACt                                                                                                                                       <  6:233810/149‑1 (MQ=255)                                gCCATCTGTTTCGCCTTGTTCTCGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCAc                                                                                                                      <  7:219477/148‑1 (MQ=255)                                          tCGCCTTGTTCTCGGGGGCGACCATCCTCAATGGCTTTGCCAGCAAGCCGAGCGAGTTTGGAATTTACGGGTTCATCTCCGGCCTGGGCTGTGGAGGCCTGATGCCGAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCt                                                                                                            <  7:199630/148‑1 (MQ=255)                                          tCGCCTTGTTCTCGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCTCTTCATCGCCGGCCAGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCt                                                                                                            <  7:199632/148‑1 (MQ=255)                                                   tctcGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCCCg                                                                                                  >  8:204282/1‑149 (MQ=255)                                                   tctcGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACg                                                                                                  >  7:231229/1‑149 (MQ=255)                                                    ctcGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGc                                                                                                 >  5:109804/1‑149 (MQ=255)                                                    ctcGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGc                                                                                                 >  1:217756/1‑149 (MQ=255)                                                     tcGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCt                                                                                                >  5:232504/1‑149 (MQ=255)                                                           gCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGc                                                                                          >  7:3827/1‑149 (MQ=255)                                                              aCCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGAt                                                                                       <  6:109804/149‑1 (MQ=255)                                                                 aTCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCAt                                                                                    <  6:232504/149‑1 (MQ=255)                                                                 aTCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCAt                                                                                    >  3:134324/1‑149 (MQ=255)                                                                       aaTGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAg                                                                              <  2:217756/149‑1 (MQ=255)                                                                                gCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTc                                                                     >  6:208505/1‑149 (MQ=255)                                                                                   aGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCt                                                                  <  4:134324/149‑1 (MQ=255)                                                                                    gCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACTAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGtt                                                                                 <  4:212842/133‑1 (MQ=255)                                                                                    gCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGCCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGtt                                                                                 >  3:212842/1‑133 (MQ=255)                                                                                       aCCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGggc                                                              <  5:116860/149‑1 (MQ=255)                                                                                         ccGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGggcgg                                                            >  5:54174/1‑149 (MQ=255)                                                                                            agcgagTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCAt                                                         <  8:231229/149‑1 (MQ=255)                                                                                               gcgttgggcatcaggccgccacagcccaggccggcgatgaagcggtagatgccCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCt                                                      >  6:147096‑M2/54‑149 (MQ=255)                                                                                                  ttgggcatcaggccgccacagcccaggccggcgatgaagcggtagatgccCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTc                                                   >  3:23193‑M2/51‑149 (MQ=255)                                                                                                    gggcatcaggccgccacagcccaggccggcgatgaagcggtagatgccCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCg                                                  <  4:23193‑M2/100‑1 (MQ=255)                                                                                                       CATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATTCTGTCGGCAg                                              <  8:214731‑M1/149‑1 (MQ=255)                                                                                                       CATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAg                                              <  1:142755‑M1/149‑1 (MQ=255)                                                                                                       CATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAg                                              <  1:147584‑M1/149‑1 (MQ=255)                                                                                                             ccGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTg                                                                            <  2:7324/113‑1 (MQ=255)                                                                                                             ccGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTg                                                                            >  1:7324/1‑113 (MQ=255)                                                                                                             ccGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGgt                                            <  5:208505/145‑1 (MQ=255)                                                                                                                cTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGTGCGGCATGCTGTCGGCAGGTGTCGGc                                      >  2:64351/1‑148 (MQ=255)                                                                                                                   cATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCgg                                                 >  1:11098/1‑134 (MQ=255)                                                                                                                   cATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCgg                                                 <  2:11098/134‑1 (MQ=255)                                                                                                                    aTCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCAGCATCtt                                 <  6:54174/149‑1 (MQ=255)                                                                                                                      agCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCATCTTCa                               >  3:58605/2‑149 (MQ=255)                                                                                                                       gCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCATCTTCAt                              <  1:64351/149‑1 (MQ=255)                                                                                                                             cTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGTCTATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCCTCTTCATGCTGcc                        >  6:289003/1‑149 (MQ=255)                                                                                                                                       gcggcCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCATCTTCATGCTGCCGCGTTTTGGc              <  4:58605/149‑1 (MQ=255)                                                                                                                                           ccTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCATCTTCATGCTGCCGCGTTTTGGCTgg           >  8:246368/1‑148 (MQ=255)                                                                                                                                               atgccCAACGCCGTGGCACTGATGAACGAATACGCACCCACGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCAGGCTGTCGGCAGGTGGCGGCATCTTCATGCTGCCGCGTTTTGGCTGGGAGt       <  5:289003‑M2/143‑1 (MQ=255)                                                                                                                                                  ccCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCATCTTCATGCTGCCGCGTTTTGGCTGGGAGTCGAt   >  8:2780‑M2/3‑149 (MQ=255)                                                                                                                                                  ccCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCATCTTCATGCTGCCGCGTTTTGGCTGGGAGTCGAt   <  8:3827‑M2/147‑1 (MQ=255)                                                                                                                                                   cCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCATCTTCATGCTGCCGCGTTTTGGCTGGGAGTCGATg  >  5:312163‑M2/2‑149 (MQ=255)                                                                                                                                                    cAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGc                                                >  1:48740/1‑102 (MQ=255)                                                                                                                                                    cAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGc                                                <  2:48740/102‑1 (MQ=255)                                                                                                                                                    cAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAg                                              >  7:65011/1‑104 (MQ=255)                                                                                                                                                    cAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAg                                              <  8:65011/104‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GGCCGACCGCATCGGGCGCAAGAAGGGCATTGCCATCTGTTTCGCCTTGTTCTCGGGGGCGACCATCCTCAATGGCTTTGCCAGCAACCCGAGCGAGTTTGGCATCTACCGCTTCATCGCCGGCCTGGGCTGTGGCGGCCTGATGCCCAACGCCGTGGCACTGATGAACGAATACGCACCCAAGCGCCTGCGCAGCACGCTGGTGGCGATCATGTTCAGTGGTTATTCGCTGGGCGGCATGCTGTCGGCAGGTGTCGGCATCTTCATGCTGCCGCGTTTTGGCTGGGAGTCGATG  >  NC_002947/3586043‑3586337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.