New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3656110 =	37 (0.760)	4 (0.090)	4/246	NT	10.2%	coding (283/1620 nt)	PP_3220	ABC transporter ATP‑binding protein
	?	NC_002947	3656175 =	36 (0.780)					coding (218/1620 nt)	PP_3220	ABC transporter ATP‑binding protein

CGCCAGCTGCAGCGCCTCGGCGATTTGCTGGCCGATCCGTTGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGCCCTGGACCAGGCTGAACGACAGCTGGCGCAGGG  >  NC_002947/3656027‑3656319                                                                                                                                                       |                                                                                                                                                 cgcCAGCTGCAGCGCCTCGGCGATTTGCTGGCCGATCCGTGGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACAGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGa                                                                                                                                                  <  2:17810/149‑1 (MQ=255)  gctcgggcaaatcgaccctggccaacgccctgcttggtctgttgccgggcaatgcacgcatcgaccaaggccagttatgggtCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGAc                                                                                                                                                 >  7:282024‑M1/83‑149 (MQ=255)    tcgggcaaatcgaccctggccaacgccctgcttggtctgttgccgggcaatgcacgcatcgaccaaggccagttatgggtCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGAcc                                                                                                                                                <  2:180879‑M1/68‑1 (MQ=255)      gggcaaatcgaccctggccaacgccctgcttggtctgttgccgggcaatgcacgcatcgaccaaggccagttatgggtCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGAccc                                                                                                                                               >  1:180879‑M1/79‑147 (MQ=255)      gCTGCAGCGCCTCGGCGATATGCTGGCCGATCCGTTGGGGGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGAGGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCAt                                                                                                                                             <  8:143132/149‑1 (MQ=255)       cTGCAGCGCCTCGGCGATTTGCTGGCCGATCCGTTGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCAt                                                                                                                                             >  8:108240/1‑148 (MQ=255)                   ggCGATTTGCTGGCCGATCCGTTGGGTGGGGTCGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGt                                                                                                                                <  8:281245/149‑1 (MQ=255)                        tttGCTGGCCGATCCGTTGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATg                                                                                                                           <  3:272641/149‑1 (MQ=255)                          tGCTGGCCGATCCGTTGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGc                                                                                                                          <  7:67842/148‑1 (MQ=255)                            cTGGCCGATCCGTTGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGt                                                                                                                        <  2:20332/148‑1 (MQ=255)                               gCCGATCCGTTCGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTAGCGCCATATCGACACCATCGACCCATAACTGGCCTTGTTCGATGCGTGCa                                                                                                                     <  6:229098/148‑1 (MQ=255)                                 cGATCCGTTGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTg                                                                                                                  <  7:108240/149‑1 (MQ=255)                                      cGTTGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGccaaa                                                                                                             >  3:207782/1‑146 (MQ=255)                                       gTTGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGCGGGCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCg                                                                                                              >  1:242537/1‑149 (MQ=255)                                          gggtgggGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCaa                                                                                                          <  7:219666/148‑1 (MQ=255)                                           ggtgggGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCaa                                                                                                          >  2:74405/1‑147 (MQ=255)                                               gggTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGAcc                                                                                                    <  1:74405/149‑1 (MQ=255)                                                    gAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAg                                                                                                 >  4:242376/1‑147 (MQ=255)                                                       gCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGt                                                                                                                                <  3:24071/113‑1 (MQ=255)                                                       gCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGt                                                                                                                                >  4:24071/1‑113 (MQ=255)                                                                  ggTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAgg                                                                                 >  6:188095/1‑149 (MQ=255)                                                                  ggTCTTGCGGCACCAGGCCGAGGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGGGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAgg                                                                                 <  4:236928/149‑1 (MQ=255)                                                                   gTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAggg                                                                                >  5:104659/1‑149 (MQ=255)                                                                         cGGGACCAGGCCGATGGTGCGCCCGC‑‑GCATCTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGAt                                                                           <  2:242537/148‑1 (MQ=255)                                                                          ggCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCTCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGAttt                                                                         <  2:109857/149‑1 (MQ=255)                                                                             aCCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGcc                                                                      >  6:231244/1‑149 (MQ=255)                                                                                  gggtcgatggtgtcgatatggcgcaagccagcgaacgcgccaggcgccagttgcgcgggcgcaccatcgACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGccc                                                                     >  1:180879‑M2/70‑147 (MQ=255)                                                                                  gCCGATGGTGCGACCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCTTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGTCCAGGTTCGATTTGCCCGAGc                                                                 <  7:174960/149‑1 (MQ=255)                                                                                   ggtcgatggtgtcgatatggcgcaagccagcgaacgcgccaggcgccagttgcgcgggcgcaccatcgACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGa                                                                   <  2:180879‑M2/80‑1 (MQ=255)                                                                                    gtcgatggtgtcgatatggcgcaagccagcgaacgcgccaggcgccagttgcgcgggcgcaccatcgACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGc                                                                 >  7:282024‑M2/68‑149 (MQ=255)                                                                                     GATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCt                                                               <  3:223514‑M1/148‑1 (MQ=255)                                                                                      ATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGa                                                             >  6:104659‑M1/1‑149 (MQ=255)                                                                                            cgcCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGcc                                                       <  5:231244/149‑1 (MQ=255)                                                                                            cgcCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGcc                                                       >  2:85959/1‑149 (MQ=255)                                                                                             gcCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGcc                                                       >  1:121628/1‑148 (MQ=255)                                                                                                       aaCTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTg                                                                                       >  5:157691/1‑108 (MQ=255)                                                                                                       aaCTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTg                                                                                       <  6:157691/108‑1 (MQ=255)                                                                                                           agccagcgaacgcgccaggcgccagttgcgcgggcgcaccatcgACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAgg                                          <  8:282024‑M2/105‑1 (MQ=255)                                                                                                            gcgcctggcgcGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAggg                                         <  1:85959/149‑1 (MQ=255)                                                                                                               cctggcgcGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAg                                           <  7:93752/144‑1 (MQ=255)                                                                                                               cctggcgcGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAg                                           >  8:93752/1‑144 (MQ=255)                                                                                                                ctggcgcGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGtctc                                     <  3:242376/149‑1 (MQ=255)                                                                                                                     gcgTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGtct                                      <  6:12071/143‑1 (MQ=255)                                                                                                                     gcgTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGtct                                      >  5:12071/1‑143 (MQ=255)                                                                                                                                 ttGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGCCCTGGACCAGGCTg                     >  4:37400/1‑148 (MQ=255)                                                                                                                                    cgcCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGCCCTGGACCAGGCTGAAc                  <  8:147938/148‑1 (MQ=255)                                                                                                                                           tCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGc                                                                 >  2:204327/1‑94 (MQ=255)                                                                                                                                           tCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGc                                                                 <  1:204327/94‑1 (MQ=255)                                                                                                                                             gACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGCCCTGGACCAGGCTGAACGACAGCTGgc        >  4:163035/1‑149 (MQ=255)                                                                                                                                              acacCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGCCCTGGACCAGGCTGAACGACAGCTGgcg       >  1:102968/1‑149 (MQ=255)                                                                                                                                                  catcgACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGc                                   <  7:81729‑M2/112‑1 (MQ=255)                                                                                                                                                  catcgACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGc                                   >  8:81729‑M2/6‑117 (MQ=255)                                                                                                                                                   atcgACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGCCCTGGACCAGGCTGAACGACAGCTGGCGCAggg  <  5:188095‑M2/145‑1 (MQ=255)                                                                                                                                                   atcgACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGCCCTGGACCAGGCTGAACGACAGCTGGCGCAggg  >  4:82149‑M2/5‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                                 CGCCAGCTGCAGCGCCTCGGCGATTTGCTGGCCGATCCGTTGGGTGGGGTTGAGGCTGACCATTGGGTCTTGCGGCACCAGGCCGATGGTGCGCCCGC‑‑GCAACTGGCGCCTGGCGCGTTCGCTGGCTTGCGCCATATCGACACCATCGACCCATAACTGGCCTTGGTCGATGCGTGCATTGCCCGGCAACAGACCAAGCAGGGCGTTGGCCAGGGTCGATTTGCCCGAGCCTGACTCGCCCACCACCGCCAGGGTCTCGCCCTGGACCAGGCTGAACGACAGCTGGCGCAGGG  >  NC_002947/3656027‑3656319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.