New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3693334	49 (1.000)	3 (0.060)	3/250	NT	6.2%	coding (292/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein
	?	NC_002947	= 3693379	44 (0.940)					coding (247/1044 nt)	PP_3259	acyl‑CoA dehydrogenase‑related protein

AACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑AGGTCGAGGTGATCAGCTTGCAGCGCCTGGATCAGT  >  NC_002947/3693232‑3693524                                                                                                                                                    |                                                                                                                                                   aaCACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAg                                                                                                                                                   >  8:220591‑M2/1‑148 (MQ=255)      cAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAggcatc                                                                                                                                              >  1:125265‑M2/1‑143 (MQ=255)       aGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCg                                                                                                                                             >  4:82528/1‑149 (MQ=255)           cTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTAt                                                                                                                                         >  5:127578/1‑149 (MQ=255)                  ccGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCt                                                                                                                                   >  7:129841/1‑148 (MQ=255)                   cGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCa                                                                                                                                 <  5:98676/149‑1 (MQ=255)                    gTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCAt                                                                                                                                <  8:129841/149‑1 (MQ=255)                      tGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCa                                                                                                                                 >  4:12944/1‑146 (MQ=255)                         gaCGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGc                                                                                                                           <  5:267359/149‑1 (MQ=255)                            gCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTc                                                                                                                                  <  4:183637/139‑1 (MQ=255)                            gCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTc                                                                                                                                  >  3:183637/1‑139 (MQ=255)                            gCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTg                                                                                                                        <  6:176726/149‑1 (MQ=255)                              aCCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGc                                                                                                                      <  8:105111/149‑1 (MQ=255)                                   gTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGt                                                                                                                  <  7:49846/148‑1 (MQ=255)                                   gTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGt                                                                                                                  <  6:127578/148‑1 (MQ=255)                                    tCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGc                                                                                                                <  4:269797/149‑1 (MQ=255)                                            gcgcgcTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTca                                                                                                         >  5:52541/1‑148 (MQ=255)                                              gcgcTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAg                                                                                                             >  7:287234/1‑142 (MQ=255)                                              gcgcTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAg                                                                                                             <  8:287234/142‑1 (MQ=255)                                                  tgtgATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCgg                                                                                                  >  3:22822/1‑149 (MQ=255)                                                    tgATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGc                                                                                                 <  3:184916/148‑1 (MQ=255)                                                              ccGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGcc                                                                                       >  1:26416/1‑148 (MQ=255)                                                                       gggTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGc                                                                              <  3:12944/148‑1 (MQ=255)                                                                            gCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGa                                                                        <  6:52541/149‑1 (MQ=255)                                                                              tctGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACg                                                                      >  1:164397/1‑149 (MQ=255)                                                                                    gccCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCCCCCGTGCCAAGGTCTGCCCGCGACGAAAgtt                                                                >  8:277080/1‑147 (MQ=255)                                                                                     cccACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGgtg                                                               <  4:22822/149‑1 (MQ=255)                                                                                     cccACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGAATACCCCCAGGATCGCCAAGGCATCGGTATCGCCCTCATAGATCTTGGCCAGTGCCATGTCACAGCCGGCCACCCGAGCAAAGGTCTGACAGCGACGCAAGgtg                                                               >  4:275569/1‑149 (MQ=255)                                                                                      ccACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGgtgt                                                              >  3:150564/1‑149 (MQ=255)                                                                                       cacaCGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGtt                                                             >  2:36015/1‑149 (MQ=255)                                                                                        acacGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAggcatctggggcgtgtgggcggcagagccacccgaagcgcgggtccacatcacagcgcgcgacggcgaccaggtgcgtctcaacggca                                                            <  3:97063‑M2/149‑89 (MQ=255)                                                                                        acacGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATAGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGttg                                                            <  3:82528/149‑1 (MQ=255)                                                                                        acacGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTACGCCAGGATCGCCAACGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCAGCCAGCGACGCAAGGTGttg                                                            >  2:301986/1‑149 (MQ=255)                                                                                         cacGCCCCAGATGCCGTCGTTTGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGttgc                                                           <  3:275569/149‑1 (MQ=255)                                                                                              cccAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcacagcgcgcgacggcgaccaggtgcgtctcaacggcaccaagg                                                      <  1:303861‑M2/149‑95 (MQ=255)                                                                                                  gATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCg                                                  <  8:212719/149‑1 (MQ=255)                                                                                                         tcgtTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACgg                                           <  2:164397/149‑1 (MQ=255)                                                                                                           gtTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACgg                                           >  8:115729/1‑147 (MQ=255)                                                                                                            ttGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAg                                        >  7:280577/1‑149 (MQ=255)                                                                                                               gCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑Ag                                    >  5:269520/1‑149 (MQ=255)                                                                                                                     tgcgctgcgcCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑AGGTCGAg                              >  4:56873/1‑149 (MQ=255)                                                                                                                     tgcgctgcgcCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑AGGTCGAg                              <  4:150564/149‑1 (MQ=255)                                                                                                                       cgctgcgcCGCATTCCGCCAGGATCGCCAAggcatctggggcgtgtgggcggcagagccacccgatgcgcgggtccacatcacagcgcgcgacggcgaccaggtgcgtctcaacggcaccaaggccttgtgttccggtgccttgcaga                              >  4:97063‑M2/1‑30 (MQ=255)                                                                                                                         ctgcgcCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑AGGTCGAGGTGa                          >  4:101741/1‑149 (MQ=255)                                                                                                                          tgcgcCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑AGGTCGAGGTGAt                         >  3:54945/1‑149 (MQ=255)                                                                                                                               cgcATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGttgccttg                                                       <  6:139509/115‑1 (MQ=255)                                                                                                                               cgcATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGttgccttg                                                       >  5:139509/1‑115 (MQ=255)                                                                                                                                   ttCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑AGGTCGAGGTGATCAGCTTGCa                <  8:280577/149‑1 (MQ=255)                                                                                                                                          aGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑TCGTCGAGGTGAGCAGCTTGCAGCGCCTg         >  4:208392/1‑149 (MQ=255)                                                                                                                                              tCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGCAAGGTCGAGGTGATCAGCTTGCAGCGCCTGGAt      <  1:36015/149‑1 (MQ=255)                                                                                                                                              tCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑AGGTCGAGGTGATCAGCTTGCAGCGCCTGGATc     <  6:269520/149‑1 (MQ=255)                                                                                                                                                 ccAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑AGGTCGAGGTGATCAGCTTGCAGCGCCTGGATCAGt  >  1:187087/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                   AACACCAGGCCTTGGTGCCGTTGAGACGCACCTGGTCGCCGTCGCGCGCTGTGATGTGGACCCGCGCATCGGGTGGCTCTGCCGCCCACACGCCCCAGATGCCGTCGTTGGCGTGGTGCGCTGCGCCGCATTCCGCCAGGATCGCCAAGGCATCGGTATGGCCCTCATAGAGCTTGGCCAGTGCCAGGTCACAGCCGGCCACCCGTGCCAAGGTCTGCCAGCGACGCAAGGTGTTGCCTTGCCCCGGCAACGGTAGC‑AGGTCGAGGTGATCAGCTTGCAGCGCCTGGATCAGT  >  NC_002947/3693232‑3693524

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.