New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3910391 =	52 (1.060)	3 (0.060)	3/250	NT	5.7%	coding (2340/2640 nt)	PP_3450	TPR repeat‑containing protein
	?	NC_002947	3910458 =	49 (1.050)					coding (2407/2640 nt)	PP_3450	TPR repeat‑containing protein

CAATGATTGGCGCATCGATGAGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGT  >  NC_002947/3910316‑3910606                                                                                                                                               |                                                                                                                                                     cAATGATTGGCGCATCGATGAGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAAccc                                                                                                                                                >  8:121020/1‑149 (MQ=255)  aaTGATTGGCGCATCGATGAGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCt                                                                                                                                               >  3:79969/1‑149 (MQ=255)  aaTGATTGGCGCATCGATGAGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCt                                                                                                                                               >  5:189096/1‑149 (MQ=255)             cATCGATGAGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACg                                                                                                                                    <  1:96736/149‑1 (MQ=255)                  aTGAGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCttt                                                                                                                               >  2:41935/1‑149 (MQ=255)                     aGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTc                                                                                                                            <  7:121020/149‑1 (MQ=255)                     aGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTc                                                                                                                            <  7:87721/149‑1 (MQ=255)                     aGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTc                                                                                                                            <  5:291178/149‑1 (MQ=255)                     aGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTc                                                                                                                            <  4:79969/149‑1 (MQ=255)                       gacgacTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGa                                                                                                                          <  6:56540/149‑1 (MQ=255)                             tGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACTCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCt                                                                                                                                 <  8:256417/136‑1 (MQ=255)                             tGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTc                                                                                                                                              >  6:214308/1‑123 (MQ=255)                             tGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTc                                                                                                                                              <  5:214308/123‑1 (MQ=255)                             tGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCt                                                                                                                                 >  7:256417/1‑136 (MQ=255)                               gaacgaacGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGt                                                                                                                             <  3:22071/138‑1 (MQ=255)                               gaacgaacGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGt                                                                                                                             >  4:22071/1‑138 (MQ=255)                                aacgaacgGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTccag                                                                                                                 >  1:129011/1‑149 (MQ=255)                                    aacgGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTccagccag                                                                                                             <  5:174333/149‑1 (MQ=255)                                    aacgGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTccagccag                                                                                                             <  1:74267/149‑1 (MQ=255)                                            ctctACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCa                                                                                                      <  1:41935/148‑1 (MQ=255)                                            ctctACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAg                                                                                                     >  3:84706/1‑149 (MQ=255)                                                    cGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACt                                                                                             >  8:57217/1‑149 (MQ=255)                                                        gctgcCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGgcg                                                                                         >  6:48954/1‑149 (MQ=255)                                                                      ccGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTccagccag                                                                                                             >  7:256459/1‑115 (MQ=255)                                                                      ccGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTccagccag                                                                                                             <  8:256459/115‑1 (MQ=255)                                                                          gcCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCgg                                                                       <  8:241297/149‑1 (MQ=255)                                                                          gcCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCgg                                                                       <  7:57217/149‑1 (MQ=255)                                                                           ccGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCggg                                                                      <  4:189400/149‑1 (MQ=255)                                                                             ggcgagctgcccggcagcttccaggcgtggccctgctggtagcgcgacagccaggcatggtcgccgCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGt                                                                    >  2:155329‑M2/67‑149 (MQ=255)                                                                              gcgagctgcccggcagcttccaggcgtggccctgctggtagcgcgacagccaggcatggtcgccgCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCggg                                                                      <  8:48312‑M2/81‑1 (MQ=255)                                                                              gcgagctgcccggcagcttccaggcgtggccctgctggtagcgcgacagccaggcatggtcgccgCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCggg                                                                      >  7:48312‑M2/66‑146 (MQ=255)                                                                                 ACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCACCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGc                                                                >  6:217457‑M1/1‑149 (MQ=255)                                                                                  ccATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCg                                                               >  3:94640/1‑149 (MQ=255)                                                                                      gCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCgg                                                                       <  6:225652/137‑1 (MQ=255)                                                                                      gCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCgg                                                                       >  5:225652/1‑137 (MQ=255)                                                                                           gCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                      <  5:48954/149‑1 (MQ=255)                                                                                           gCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                      <  4:84706/149‑1 (MQ=255)                                                                                            cTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                      >  7:264828/1‑148 (MQ=255)                                                                                                 gcgcTACCAGCAGGGCCACGCTTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAAtgg                                                 <  6:310823/148‑1 (MQ=255)                                                                                                     tACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGtt                                            >  1:223323/1‑149 (MQ=255)                                                                                                                ccACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGAcc                                 >  5:93044/1‑149 (MQ=255)                                                                                                                    gCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTa                             <  4:94640/149‑1 (MQ=255)                                                                                                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                      >  1:183006/1‑122 (MQ=255)                                                                                                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGc                                                      <  2:183006/122‑1 (MQ=255)                                                                                                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                       >  6:53289/1‑137 (MQ=255)                                                                                                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                       >  6:48582/1‑137 (MQ=255)                                                                                                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                       <  5:53289/137‑1 (MQ=255)                                                                                                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTcgacg                                       <  5:48582/137‑1 (MQ=255)                                                                                                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTAc                            >  5:306382/1‑148 (MQ=255)                                                                                                                      cTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACa                           <  8:264828/149‑1 (MQ=255)                                                                                                                       tGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACaa                          >  8:34969/1‑149 (MQ=255)                                                                                                                        ggAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAAc                         >  4:301025/1‑149 (MQ=255)                                                                                                                                   ggCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCgg              <  6:306382/149‑1 (MQ=255)                                                                                                                                        cTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGc         >  3:141280/1‑149 (MQ=255)                                                                                                                                            ccgCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGa      >  5:268479‑M2/4‑148 (MQ=255)                                                                                                                                               cAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAgt  <  3:301025/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                     CAATGATTGGCGCATCGATGAGGACGACTGGAACGAACGGTTCCTCTACCTCGATGCTGCCTGGTGGACCCGCGCCGGCGACCATGCCTGGCTGTCGCGCTACCAGCAGGGCCACGCCTGGAAGCTGCCGGGCAGCTCGCCGCAAACCCTCATGCCCTACGGCTTTGTCGAGTTCTCCAGCCAGGACCCCAGCAACGACTGGCGCCAGGACGCCCGCGCCGGGGTTGGCGTGCGCTGGCAATGGTGGTTCGACGACGACCGCTACAACGCCTACCGCGGCTCGCTGAAAGT  >  NC_002947/3910316‑3910606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.