New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4480540 =	31 (0.630)	4 (0.080)	4/256	NT	11.5%	coding (409/1326 nt)	PP_3972	short‑chain dehydrogenase/reductase family oxidoreductase
	?	NC_002947	4480597 =	31 (0.650)					coding (466/1326 nt)	PP_3972	short‑chain dehydrogenase/reductase family oxidoreductase

AGAGCAAGAAGCTCCCCGTAGGGGATATCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGGCCGCCCAGGCCTCAGCGTTTGGCCATGGACGGATC  >  NC_002947/4480452‑4480740                                                                                                                                                  |                                                                                                                                                agagCAAGAAGCTCCCCGTAGGGGATATCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCcgc                                                                                                                                               >  2:157203/1‑148 (MQ=255) agagCAAGAAGCTCCCCGTAGGGGATATCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCcgc                                                                                                                                               >  2:90096/1‑148 (MQ=255)  gtgggtgacgtcggtggtgaccgctatggcatccgtaccacaatcggtgcattcatccagaacgtcaaataatgcttcttcatcgcgGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGa                                                                                                                                             >  5:47248‑M1/88‑149 (MQ=255)   tgggtgacgtcggtggtgaccgctatggcatccgtaccacaatcggtgcattcatccagaacgtcaaataatgcttcttcatcgcgGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGAt                                                                                                                                            >  4:264020‑M1/87‑149 (MQ=255)        gaagCTCCCCGTAGGGGATATCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGTCCGCGATgaag                                                                                                                                        >  8:248988/1‑148 (MQ=255)        gaagCTCCCCGTAGGGGATATCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATgaag                                                                                                                                        >  8:92050/1‑148 (MQ=255)                ccGTAGGGGATATCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCattat                                                                                                                               >  6:148837/1‑149 (MQ=255)                 cGTAGGGGATATCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGa                                                                                                                                             >  8:71756/1‑134 (MQ=255)                 cGTAGGGGATATCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGa                                                                                                                                             <  7:71756/134‑1 (MQ=255)                           atCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTg                                                                                                                    >  3:28496/1‑149 (MQ=255)                            tCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTg                                                                                                                    <  1:240340/148‑1 (MQ=255)                            tCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTg                                                                                                                    <  2:22852/148‑1 (MQ=255)                              ccGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGa                                                                                                                  <  8:102670/148‑1 (MQ=255)                              ccGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGa                                                                                                                  <  7:42063/148‑1 (MQ=255)                                gTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGa                                                                                                               <  1:157203/149‑1 (MQ=255)                                   aGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAAt                                                                                                             <  3:223755/148‑1 (MQ=255)                                                gTGGCAAAGGTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGt                                                                                               <  6:213613/149‑1 (MQ=255)                                                     aaaGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGa                                                                                          >  8:24765/1‑149 (MQ=255)                                                               tAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCg                                                                                <  1:90096/149‑1 (MQ=255)                                                               tAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCg                                                                                <  8:153120/149‑1 (MQ=255)                                                                    acaGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTcac                                                                           >  4:242141/1‑149 (MQ=255)                                                                                 gCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCaccacc                                                                       >  7:50166/1‑140 (MQ=255)                                                                                 gCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCaccacc                                                                       <  8:50166/140‑1 (MQ=255)                                                                                   atcgcgggctgcgagcaccaagcgtgcgcctttgcaggcaaaggcgtgcgcggcggcgcggccCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCca                                                            >  4:264020‑M2/64‑149 (MQ=255)                                                                                    tcgcgggctgcgagcaccaagcgtgcgcctttgcaggcaaaggcgtgcgcggcggcgcggccCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCcac                                                           >  5:47248‑M2/63‑149 (MQ=255)                                                                                         ggctgcgagcaccaagcgtgcgcctttgcaggcaaaggcgtgcgcggcggcgcggccCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGa                                                      >  4:279559‑M2/58‑149 (MQ=255)                                                                                              cgccgccgcGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAgg                                                 <  4:28496/149‑1 (MQ=255)                                                                                                        cACGCCTTTGCCTGCAAAGGCTCACGCTTGGTGCTCGCAGTCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCt                                       <  7:248988/149‑1 (MQ=255)                                                                                                         gcGCCTTTGCAGGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCcaca                                                          >  1:101651/2‑129 (MQ=255)                                                                                                         cgtgcgcctttgcaggcaaaggcgtgcgcggcggcgcggccCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTg                                      <  6:47248‑M2/108‑1 (MQ=255)                                                                                                         aCGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTg                                      >  8:13414/1‑149 (MQ=255)                                                                                                         aCGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTg                                      >  7:126296/1‑149 (MQ=255)                                                                                                           gCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGgc                                    >  7:287586/1‑149 (MQ=255)                                                                                                           gCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGgc                                    >  6:116523/1‑149 (MQ=255)                                                                                                           gCCTTTGCAGGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGgc                                    >  2:190008/1‑149 (MQ=255)                                                                                                                 gCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGGCCGccc                               <  6:274609/148‑1 (MQ=255)                                                                                                                              cACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGGCCGCCCAGGCCTCAGCGttt                 <  5:116523/149‑1 (MQ=255)                                                                                                                                      gTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGtt                                               <  2:167968/111‑1 (MQ=255)                                                                                                                                      gTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGtt                                               >  1:167968/1‑111 (MQ=255)                                                                                                                                        gCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGCCGTCACCCACAGCGACCAGGTTCAAGCGCTGGCCGCCCAGGCCTCAGCGTTTGGCCATGGAc       >  4:223207/1‑149 (MQ=255)                                                                                                                                         cTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGGGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGGCCACCCAGGCCTCAGCGTTTGGCCATGGAc       <  5:148837/148‑1 (MQ=255)                                                                                                                                            gCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGGCCGCCCAGGCCTCAGCGTTTGGCCATGGACGGAt   <  1:190008/149‑1 (MQ=255)                                                                                                                                             cAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGGCCGCCCAGGCCTCAGCGTTTGGCCATGGACGGATc  <  3:242141/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                AGAGCAAGAAGCTCCCCGTAGGGGATATCCCGTCAGGGGGCCGCTGCGTGGCAAAGTTGTGGTAATCACAGGGGCATCCAGCGGCATAGGCCGCGCCGCCGCGCACGCCTTTGCCTGCAAAGGCGCACGCTTGGTGCTCGCAGCCCGCGATGAAGAAGCATTATTTGACGTTCTGGATGAATGCACCGATTGTGGTACGGATGCCATAGCGGTCACCACCGACGTCACCCACAGCGACCAGGTTCAAGCGCTGGCCGCCCAGGCCTCAGCGTTTGGCCATGGACGGATC  >  NC_002947/4480452‑4480740

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.