New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4647557 =	26 (0.530)	8 (0.230)	7/184	NT	30.1%	intergenic (+10/+121)	fusB/PP_4112	elongation factor G 2/sulfate transporter
	?	NC_002947	4647665 =	19 (0.550)					intergenic (+118/+13)	fusB/PP_4112	elongation factor G 2/sulfate transporter

AGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGA  >  NC_002947/4647531‑4647808                                                                                                                                       |                                                                                                                                                atccccGCGGGGTGTAAGGGTTTCTGCTGTGCGGGCCTCTTGGGGGTTAACCCGGCTCCTACTGCATGGCCGCAGGCCCATACTTTGTTGCCCCCCGTGTTGGTGGGGTTTTACCCGCGAAGTGGCCGGCACAGACCGCAACAGTTTTc                                                                                                                                   <  2:202033/145‑1 (MQ=255)                                     CTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGCCCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGc                                                                                               <  7:5857‑M1/149‑1 (MQ=255)                                        TTCGCGGTTAAACCCTATCCTACAGGATGGCCGCAGGCCAAAACATTGTCCCCCCCCCTGTAGCAGCGGGTTTACCCGCTAATAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCa                                                                                              >  1:194274‑M1/1‑147 (MQ=255)                                           GCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCt                                                                                         <  3:135564‑M1/149‑1 (MQ=255)                                             gggTAAACCCGCTCGTTCAGGATGCCCGCTGGCCCATACTTGGGGGGCCCCACTTTAGTTGGGGTTTTACCGGCGAAGAGGCCGGCACAGACAGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTcc                                                                                       <  6:254637/149‑1 (MQ=255)                                              GGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGtttt                                                                                                                                    >  5:70509‑M1/1‑103 (MQ=255)                                              GGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGtttt                                                                                                                                    <  6:70509‑M1/103‑1 (MQ=255)                                                    cccgctcctacaggggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAAt                                                                                >  5:162727‑M2/84‑149 (MQ=255)                                                     CCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATg                                                                               <  8:213571‑M1/149‑1 (MQ=255)                                                           ctacaggggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagGCCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGAc                                                                                    <  1:228913‑M2/62‑1 (MQ=255)                                                           ctacaggggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagGCCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGAc                                                                                    >  2:228913‑M2/77‑138 (MQ=255)                                                           ctacaggggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGcttc                                                                                                   <  8:137171‑M2/47‑1 (MQ=255)                                                           ctacaggggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGcttc                                                                                                   >  7:137171‑M2/77‑123 (MQ=255)                                                           CTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGcaccac                                                                         <  5:3077‑M1/149‑1 (MQ=255)                                                               aggggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTAGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCAcgcg                                                                      >  7:271564‑M2/73‑148 (MQ=255)                                                                 gggggcgcacaatgtttgggcctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCa                                                                    >  6:42804‑M2/71‑148 (MQ=255)                                                                 GATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCaa                                                                   >  6:283284‑M1/1‑149 (MQ=255)                                                                 GATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCa                                                                    <  5:283284‑M1/148‑1 (MQ=255)                                                                     gCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGc                                                               >  4:110170/1‑149 (MQ=255)                                                                      ccGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCt                                                              >  6:105750/1‑149 (MQ=255)                                                                             cccAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGCCCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGc                                                       >  7:205237/1‑149 (MQ=255)                                                                             cccAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGca                                                                             >  8:75458/1‑127 (MQ=255)                                                                             cccAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGca                                                                             <  7:75458/127‑1 (MQ=255)                                                                              ccAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCAGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGcc                                                      >  5:210336/1‑149 (MQ=255)                                                                               cAAACATTGTGCGCCCCCCTGTAGGCGCGGGTTGACCCGCGAAGAGGCCGGCCCAGACCGCACCAGGGGTCCATGCGGCGCGCCCGCCCGCGGCAACCGCGTCTTGCCCCGCTCCGACACAGGCACCCCGCGCAACGGCTGGCGCGccg                                                     >  4:20970/1‑148 (MQ=255)                                                                               cAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACTGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCt                                                     >  2:215756/1‑149 (MQ=255)                                                                               cAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCt                                                     >  1:277696/1‑149 (MQ=255)                                                                                aaaCATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCtt                                                    >  5:21100/1‑149 (MQ=255)                                                                                aaaCATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCtt                                                    >  3:34894/1‑149 (MQ=255)                                                                                aaaCATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCAGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCtt                                                    >  5:16662/1‑149 (MQ=255)                                                                                  aCATTGTGCGCCCCCCTTTAGCAGCGGTTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTgg                                                  <  5:277173/149‑1 (MQ=255)                                                                                    aTTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACgcgc                                                                     >  1:285602/1‑128 (MQ=255)                                                                                    aTTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACgcgc                                                                     <  2:285602/128‑1 (MQ=255)                                                                                      ctgcggccatcctgtaggagcgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATa                                              <  5:42804‑M2/100‑1 (MQ=255)                                                                                          cgcCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACgcgc                                                                     <  6:110145/122‑1 (MQ=255)                                                                                          cgcCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACgcgc                                                                     >  5:110145/1‑122 (MQ=255)                                                                                               cccTGTAGGAGCGGGTTTACCCGCGAAGCGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTGCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTcgcg                                     >  6:211871/1‑149 (MQ=255)                                                                                                      gccgcgggttaacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGtt                              <  4:135564‑M2/116‑1 (MQ=255)                                                                                                          cgggtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGtttt                            >  2:183497‑M2/30‑147 (MQ=255)                                                                                                             gtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGcc                                                          <  1:77097‑M2/88‑1 (MQ=255)                                                                                                             gtttacccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGcc                                                          >  2:77097‑M2/27‑114 (MQ=255)                                                                                                                   ccgcgaagaggccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCaa                 <  6:162727‑M2/129‑1 (MQ=255)                                                                                                                    cgcgaagaggccagcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAAc                <  6:210336‑M2/130‑1 (MQ=255)                                                                                                                             gccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGaata       <  7:230597‑M2/139‑1 (MQ=255)                                                                                                                              ccggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACTGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTCGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGaataa      <  1:215756‑M2/140‑1 (MQ=255)                                                                                                                               cggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGaataat     <  6:3077‑M2/141‑1 (MQ=255)                                                                                                                               cggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGaataat     >  5:52682‑M2/9‑149 (MQ=255)                                                                                                                               cggcacagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGaataa      >  2:306402‑M2/9‑148 (MQ=255)                                                                                                                                   acagACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGa  >  3:148813‑M2/5‑148 (MQ=255)                                                                                                                                       |                                                                                                                                                AGAGCCGCGGGGAGTAAGCGGTTCTCCTGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAGGATGGCCGCAGGCCCAAACATTGTGCGCCCCCCTGTAGGAGCGGGTTTACCCGCGAAGAGGCCGGCACAGACCGCAACAGTTTTCAATGCTGCTCGCCCGCCCGCTTCAACAGCTTCTTGCACCGCTCCGACAAATGCACCACGCGCAAATGCTTGCCCGCCTTGGCATAGCGCTCGCGCAGGGTTTTCAGCGCCGCAACGGCCGAATAATCGA  >  NC_002947/4647531‑4647808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.