New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4889569 =	70 (1.430)	7 (0.180)	4/208	NT	15.1%	intergenic (+15/‑138)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase
	?	NC_002947	4889660 =	23 (0.590)					intergenic (+106/‑47)	hyi/glxR	hydroxypyruvate isomerase/2‑hydroxy‑3‑oxopropionate reductase

CGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCA  >  NC_002947/4889512‑4889804                                                                                                                                                     |                                                                                                                                                 cGAAGCGGGCCTGGGCTGGCTGAAACCCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAgggg                                                                                                                                                  <  5:249305/149‑1 (MQ=255)  gAAGCGGGCCTTGGCTGGCTGAAAACCCTCAACTCAATCTTAGGATCAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACTCCGGCAAAGCGGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAggggg                                                                                                                                                 <  4:226084/149‑1 (MQ=37)    aGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGc                                                                                                                                                <  5:78349/148‑1 (MQ=255)    aGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGc                                                                                                                                                >  6:78349/1‑148 (MQ=255)             gggCTGGCGGAAACCCCACAACGCTATCTGAGCAACAACTCGGGACGCTGTGGGAGCGGGCTCGCCGGCGAACACCTTCAAAGCCGGTGCCATCCACCGATTTGTGTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAgcttgc                                                                                                                                      <  8:205975/149‑1 (MQ=255)                ctggctgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGcttgcttg                                                                                                                                   <  7:89923/149‑1 (MQ=255)                     tgAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTAGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGata                                                                                                                              >  7:33135/1‑149 (MQ=255)                      gAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAgcttg                                                                                                                                       <  3:259946/139‑1 (MQ=255)                      gAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAgcttg                                                                                                                                       >  4:259946/1‑139 (MQ=255)                             cacaACGCAATCTGAGTAACAAGTCGGGACCCTGTGGTAGCGGGCTCGCCCGCTAACACCGGCAAAGCCGGTGCCATCCACCGTGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAAtt                                                                                                                      <  8:33135/149‑1 (MQ=37)                             cacaACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCTAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATca                                                                                                                           <  2:13724/144‑1 (MQ=255)                             cacaACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATca                                                                                                                           >  1:13724/1‑144 (MQ=255)                                   gCAATCTGAGGAACAACTCGGGACCCTGTGGGAGGGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCAGAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAag                                                                                                                <  1:208278/149‑1 (MQ=255)                                     aaTCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCTAAGCTTGCTTGAGATATCACAATTACAAagag                                                                                                              >  5:134747/1‑149 (MQ=255)                                     aaTCTGAGCACCAACTGGGCACCCGGGGGTAGGGGGCTCCCCCGCTAACCCGGTCAACGCGGGTGCAATCCCCCTTTTTGTCTGCTTCGGGGCCTTGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAagag                                                                                                              <  2:116833/149‑1 (MQ=255)                                                caacTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGGGCCATCCCCCGAGTTGTCTGCTTCGCGGGCGCGCCCGCTCCCCCAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCa                                                                                                   >  5:168568/1‑149 (MQ=255)                                                   cTCGGGACCCTGTGGGAGCGGGCTCGCCCGCTAACACGGGAAAAGCCGTTGCCATCCACCGATTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATgg                                                                                                <  5:174649/149‑1 (MQ=255)                                                    tCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATACACCGAGTTGTATGCTTAGCGGGCGAGCCCGCTACCACAGGGGGCCAAAGCTTGCTTGAGATATAACAATTAAAAAGACGTAATTTATCATGGc                                                                                               >  4:128461/1‑149 (MQ=25)                                                               TGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCTAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGt                                                                                     >  6:134747‑M1/1‑148 (MQ=255)                                                                    GCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATc                                                                               >  1:65142‑M1/1‑149 (MQ=255)                                                                      GGGCTCGCCGGCGAACACCGGCAACGCCGGTGCCATCCACCGTGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCgg                                                                             >  6:168568‑M1/1‑149 (MQ=255)                                                                            GCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCgg                                                                             <  6:232331‑M1/143‑1 (MQ=255)                                                                            GCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCgg                                                                             >  5:232331‑M1/1‑143 (MQ=255)                                                                             cccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCgg                                                                       >  1:220156‑M2/73‑148 (MQ=255)                                                                             cccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCgg                                                                       >  1:207812‑M2/73‑148 (MQ=255)                                                                              ccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATca                                                                                                                           >  4:249243‑M2/72‑95 (MQ=255)                                                                              ccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATca                                                                                                                           <  3:249243‑M2/24‑1 (MQ=255)                                                                              ccgcgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGca                                                                     >  5:8129‑M2/72‑149 (MQ=255)                                                                              CCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGca                                                                     <  2:158950‑M1/149‑1 (MQ=255)                                                                                 cgaagcagacaactcggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGc                                                                                                                                                >  7:130258‑M2/69‑71 (MQ=255)                                                                                 CGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatca                                                                  <  6:206009‑M1/149‑1 (MQ=255)                                                                                  GAACACCTGCAAAGCCGGTGCCATCCACCGATTTGTCTGGTTCGCTGGCGATCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATAGCTAAAATCGGTTTCATCGGCACCGGcatcat                                                                 >  1:241460‑M1/1‑149 (MQ=255)                                                                                    ACACGGGCAAAGCCGGTGCCATCCACCGTTTTGTCTGCTTCGCGGGCTAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGcatcat                                                                 >  1:149860‑M1/1‑147 (MQ=255)                                                                                    ACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGATATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATgg                                                               >  8:60684‑M1/1‑149 (MQ=255)                                                                                        cGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGctt                                                           <  3:128461/149‑3 (MQ=255)                                                                                        cGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCaa                                                           >  4:143153/1‑149 (MQ=255)                                                                                          gCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                                         >  5:189127/1‑149 (MQ=255)                                                                                          gCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGc                                                         >  5:123243/1‑149 (MQ=255)                                                                                                ggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                                                   <  2:207812‑M2/96‑1 (MQ=255)                                                                                                ggtggatggcaccggctttgccggtgttcgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATgg                                                   <  2:220156‑M2/96‑1 (MQ=255)                                                                                                      ccATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAg                                              >  7:107051/1‑148 (MQ=255)                                                                                                        aTCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAAc                                           >  8:167312/1‑149 (MQ=255)                                                                                                           cACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCt                                         <  1:158950/148‑1 (MQ=255)                                                                                                            aCCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTCAGATATCACAATTACAAGGAGGTAATTTCTCAAGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTg                                        >  5:216055/1‑148 (MQ=255)                                                                                                             ccGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGc                                       >  5:207749/1‑148 (MQ=255)                                                                                                                     tCTGCTTCGCTGGTGAGCCCTCTCCCACATGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCa                               <  8:79674/148‑1 (MQ=255)                                                                                                                     tCTGCTTCGCTGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCa                               <  8:83983/148‑1 (MQ=255)                                                                                                                            cgcgggcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTcac                         <  8:107051‑M2/122‑1 (MQ=255)                                                                                                                                 gcgagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATAACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGt                  >  6:232632‑M2/21‑149 (MQ=255)                                                                                                                                   gagcccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTc                <  7:167312‑M2/131‑1 (MQ=255)                                                                                                                                      cccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCAtt             >  2:212533‑M2/16‑149 (MQ=255)                                                                                                                                       ccgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCAttt            >  6:252118‑M2/15‑149 (MQ=255)                                                                                                                                        cgctcccacagggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTCTTCAttt            >  8:200206‑M2/14‑148 (MQ=255)                                                                                                                                             ccacagggGTCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTccaccc      <  6:70220‑M2/141‑1 (MQ=255)                                                                                                                                                 agggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACccacca  <  3:143153‑M2/145‑1 (MQ=255)                                                                                                                                                 agggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACccacca  >  3:214410‑M2/5‑149 (MQ=255)                                                                                                                                                 agggGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACccacca  >  6:18271‑M2/5‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                 CGAAGCGGGCCTGGGCTGGCTGAAAACCCACAACGCAATCTGAGGAACAACTCGGGACCCTGTGGGAGCGGGCTCGCCCGCGAACACCGGCAAAGCCGGTGCCATCCACCGAGTTGTCTGCTTCGCGGGCGAGCCCGCTCCCACAGGGGGCCAAAGCTTGCTTGAGATATCACAATTACAAAGAGGTAATTTCTCATGGCTAAAATCGGTTTCATCGGCACCGGCATCATGGGCAAGCCCATGGCTCAGAACCTGCAAAAGGCAGGTCACAGCCTGTTCATTTCCACCCACCA  >  NC_002947/4889512‑4889804

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.