New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4898669 =	44 (0.900)	3 (0.060)	3/254	NT	6.4%	coding (800/924 nt)	PP_4307	DMT superfamily permease
	?	NC_002947	4898693 =	45 (0.950)					coding (776/924 nt)	PP_4307	DMT superfamily permease

TTGCGGGCCTCTTCGCGGGTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCACCATACCCAGTGTCAACAAGCTGGCCAAC  >  NC_002947/4898550‑4898836                                                                                                                                                |                                                                                                                                                ttGCGGGCCTCTTCGCGGGTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCAACCCCCACCCACACTATCCGCGCCAGGCGGTGGCCCAACGCCACCCac                                                                                                                                            >  3:303092/1‑148 (MQ=255)   gCGGGCCTCTTCGCGGGTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGt                                                                                                                                           <  7:223867/148‑1 (MQ=255)    cGGGCCTCTTCGCGGGTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCCCCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGCACGCCACCCAGTcc                                                                                                                                         >  1:124051/1‑149 (MQ=255)    cGGGCCTCTTCGCGGGTAAACCCGCACCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTcc                                                                                                                                         <  4:131013/149‑1 (MQ=255)       cacaccggcctgatgtatgtactgttgtacagcgccatccagcgtttgcccacggccttgaccggtgcgctgtcgttcatttactagattgcggcaattctggtggactgggtGGCGCCAGGCGGTGCCCGAACGCCACCCAGTccac                                                                                                                                       >  1:91348‑M1/114‑148 (MQ=255)         ctctTCGCGGGTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTccac                                                                                                                                       >  6:210559/1‑146 (MQ=255)            cggcctgatgtatgtactgttgtacagcgccatccagcgtttgcccacggccttgaccggtgcgctgtcgttcatttacccgattgcggcaattctggtggactgggtGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGa                                                                                                                                   <  6:250342‑M1/39‑1 (MQ=255)            cggcctgatgtatgtactgttgtacagcgccatccagcgtttgcccacggccttgaccggtgcgctgtcgttcatttacccgattgcggcaattctggtggactgggtGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGa                                                                                                                                   >  5:250342‑M1/109‑147 (MQ=255)              cgcgGGTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGaa                                                                                                                                  <  2:166821/146‑1 (MQ=255)              cgcgGGTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTg                                                                                                                               >  6:243015/1‑149 (MQ=255)                cgGGTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGcc                                                                                                                             <  6:57118/149‑1 (MQ=255)                  ggTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCAGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCCGGCGGTGCCCGCACGCCACCCCGTCCACCAGAAATGCCg                                                                                                                            >  4:151248/1‑148 (MQ=255)                      aaCCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAAt                                                                                                                        <  5:243015/148‑1 (MQ=255)                        cccGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCgg                                                                                                                     >  8:18824/1‑149 (MQ=255)                            cgcCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTaa                                                                                                                 <  2:204195/149‑1 (MQ=255)                             gcCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTaaa                                                                                                                <  7:18824/149‑1 (MQ=255)                                              ccGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCg                                                                                               <  3:151248/149‑1 (MQ=255)                                                gAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCgg                                                                                              >  2:292665/1‑148 (MQ=255)                                                     gAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAgg                                                                                        >  5:69719/1‑149 (MQ=255)                                                     gAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCCGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAgg                                                                                        >  7:10460/1‑149 (MQ=255)                                                            caccCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCCCCCCCCGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCCCCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGGCAAGGCCGTggg                                                                                 >  4:302899/1‑149 (MQ=255)                                                            caccCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTggg                                                                                 <  1:115614/149‑1 (MQ=255)                                                             accCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTggg                                                                                 >  3:107176/1‑148 (MQ=255)                                                                  tgctgcATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCg                                                                                               >  8:104386/1‑129 (MQ=255)                                                                  tgctgcATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCg                                                                                               <  7:104386/129‑1 (MQ=255)                                                                    ctgcATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGc                                                                          <  6:89328/148‑1 (MQ=255)                                                                       cATGCCCGCTGCCGCCAGCAGGATCAACCCCCCCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGa                                                                      >  7:251030/1‑149 (MQ=255)                                                                          gCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATgg                                                                   >  6:62208/1‑149 (MQ=255)                                                                                  ccgccAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGt                                                             <  7:6451/147‑1 (MQ=255)                                                                                  ccgccAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTa                                                            >  2:296502/1‑148 (MQ=255)                                                                                  ccgccAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTa                                                            <  7:231413/148‑1 (MQ=255)                                                                                           ggATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGtaca                                                  <  6:69719/149‑1 (MQ=255)                                                                                            gATCAACCCCACCACCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGAGCACCGGTCAAGGCCCTGCGCAAACGCTGTATGGCGCTGTACAACAGtaca                                                  >  1:302607/1‑148 (MQ=255)                                                                                               cAACCCCACACCCACCCACTGTAGCGGCGCCAGGCGGAGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCCCACCCGTCAAGCCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGtacatac                                               >  6:114573/1‑148 (MQ=255)                                                                                                 accccaccccCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATc                                            <  8:10460/149‑1 (MQ=255)                                                                                                  ccccaccccCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAATGCTGGATGGCGCTGTACAACAGTACATACATCa                                           <  1:193280/149‑1 (MQ=255)                                                                                                     caccccCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTacatacat                                             <  2:71353/144‑1 (MQ=255)                                                                                                     caccccCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTacatacat                                             >  1:71353/1‑144 (MQ=255)                                                                                                      accccCAGCGACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGcc                                       <  4:303092/149‑1 (MQ=255)                                                                                                        ccccAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAAAGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCgg                                     >  1:182112/1‑149 (MQ=255)                                                                                                         tctggtggactgggtggcgttcgggcaccgcctggcgccACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCg                                      <  6:250342‑M2/108‑1 (MQ=255)                                                                                                         tctggtggactgggtggcgttcgggcaccgcctggcgccACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCg                                      >  5:250342‑M2/40‑147 (MQ=255)                                                                                                          ccAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCgggt                                   >  7:47630/1‑147 (MQ=255)                                                                                                             gtggactgggtggcgttcgggcaccgcctggcgccACCCAGTCCACCAGAATTGCCGCAATCTAGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGtgtg                                 >  1:91348‑M2/36‑148 (MQ=255)                                                                                                               cACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCAc                              >  6:117797/1‑149 (MQ=255)                                                                                                                     aGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAgg                                         <  8:291373/132‑1 (MQ=255)                                                                                                                     aGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAgg                                         >  7:291373/1‑132 (MQ=255)                                                                                                                      gcggcgCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCACCATAccc                       <  2:124051/149‑1 (MQ=255)                                                                                                                       cggcgCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCACCATACCCa                      <  4:107176/149‑1 (MQ=255)                                                                                                                           GCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGta                                                    <  7:220572‑M1/115‑1 (MQ=255)                                                                                                                           GCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGta                                                    >  8:220572‑M1/1‑115 (MQ=255)                                                                                                                             cAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCACCATACCCAGTGTc                 >  6:71294/1‑148 (MQ=255)                                                                                                                               ggCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCACCATACCCAGTGTcaac              <  1:292665/149‑1 (MQ=255)                                                                                                                                      cccGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCACCATACCCAGTGTCAACAAGCTg        <  5:62208/148‑1 (MQ=255)                                                                                                                                           aCGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCACCATACCCAGTGTCAACAAGCTGGCCAAc  <  8:251030/149‑1 (MQ=255)                                                                                                                                                aCCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCa                               >  6:184016/1‑115 (MQ=255)                                                                                                                                                |                                                                                                                                                TTGCGGGCCTCTTCGCGGGTAAACCCGCGCCTACAGGATGCCGCGCCGAGCGGAACCACCACCCCTGCTGCATGCCCGCTGCCGCCAGCAGGATCAACCCCACCCCCAGCCACTGTAGCGGCGCCAGGCGGTGCCCGAACGCCACCCAGTCCACCAGAATTGCCGCAATCGGGTAAATGAACGACAGCGCACCGGTCAAGGCCGTGGGCAAACGCTGGATGGCGCTGTACAACAGTACATACATCAGGCCGGTGTGCACCATACCCAGTGTCAACAAGCTGGCCAAC  >  NC_002947/4898550‑4898836

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.