New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5370951	43 (0.880)	3 (0.060)	3/252	NT	6.2%	coding (986/3231 nt)	carB	carbamoyl‑phosphate synthase large subunit
	?	NC_002947	= 5370984	50 (1.060)					coding (953/3231 nt)	carB	carbamoyl‑phosphate synthase large subunit

CGAAGCGTGGCAGCTTGGTGACGACGTAGTCGATCGAAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGATTTCACGCAGCACCGCCAGCGAGGCGTT  >  NC_002947/5370841‑5371132                                                                                                                                                |                                                                                                                                                     cGAAGCGTGGCAGCTTGGTGACGACGTAGTCGATCGAAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGtggcc                                                                                                                                                 <  7:156047‑M2/149‑6 (MQ=255)  gAAGCGTGGCAGCTTGGTGACGACGTAGTCGATCGAAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCt                                                                                                                                                >  7:267314/1‑149 (MQ=255)    aGCGTGGCAGCTTGGTGACGACGTAGTCGATCGAAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTg                                                                                                                                              <  6:81591/149‑1 (MQ=255)             gCTTGGTGACGACGTAGTCGATCGAAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAgg                                                                                                                                     >  5:282570/1‑149 (MQ=255)                  gTGACGACGTAGTCGATCGAAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCgg                                                                                                                                 <  5:248629/148‑1 (MQ=255)                  gTGACGACGTAGTCGATCGAAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGa                                                                                                                                <  8:95073/149‑1 (MQ=255)                   tGACGACGTAGTCGATCGAAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGAc                                                                                                                               >  3:169406/1‑149 (MQ=255)                                gatcgaAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACAcgc                                                                                                                  >  3:302159/1‑149 (MQ=255)                                gaacgaAGGTTCGAAGCACGCTGGGGTGCGACCTCCAGTGATGTCGTTCTGCAGCTCGTCGAGCGTGTAACCAATTGCAAGCTTGGCGGCCATCGTGGCGATCGGGAAGCCGGTGGCCTTGGCGGCCAGGGCGGACGAACTCGACAcgc                                                                                                                  >  4:4070/4‑149 (MQ=255)                                  tcgaAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACAcgcgc                                                                                                                <  8:17390/149‑1 (MQ=255)                                          tCGAAGGACGCTGGGGTGCGACCGCCAGTGATGACGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCAt                                                                                                        >  4:43850/1‑149 (MQ=255)                                            gAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGAc                                                                                                                               <  7:208265/124‑1 (MQ=255)                                              aGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCAtctc                                                                                                     >  8:101828/1‑148 (MQ=255)                                               ggACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGa                                                                                                   <  8:267314/149‑1 (MQ=255)                                                         gTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACAcgcgcg                                                                                                               >  2:231831/1‑127 (MQ=255)                                                         gTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACAcgcgcg                                                                                                               <  1:231831/127‑1 (MQ=255)                                                          tGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATg                                                                                        <  8:185199/149‑1 (MQ=255)                                                                cGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCg                                                                                  <  3:35714/149‑1 (MQ=255)                                                                cGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCg                                                                                  <  4:302159/149‑1 (MQ=255)                                                                  ccAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGa                                                                                                                       >  5:229400/1‑110 (MQ=255)                                                                  ccAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGa                                                                                                                       <  6:229400/110‑1 (MQ=255)                                                                  ccAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGgt                                                                                <  8:156047/149‑1 (MQ=255)                                                                  ccAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGgt                                                                                <  7:87726/149‑1 (MQ=255)                                                                  ccAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGgt                                                                                >  6:301016/1‑149 (MQ=255)                                                                   cAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGgtg                                                                               >  5:209919/1‑149 (MQ=255)                                                                          ggcGTTCTGCAGCGAGTCGAGGGGGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCggg                                                                         <  7:68604/146‑1 (MQ=255)                                                                          gTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCggg                                                                         >  4:28410/1‑148 (MQ=255)                                                                                  gCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCAGCCGGTGTTCGGGCAAATGcc                                                                 >  3:150443/1‑148 (MQ=255)                                                                                     gCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAAc                                                             <  3:28410/149‑1 (MQ=255)                                                                                     gCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCAGTGTTCGGGCAAATGCCGAAc                                                             >  6:129255/1‑149 (MQ=255)                                                                                         gtcgAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGa                                                         >  8:285897/1‑149 (MQ=255)                                                                                         gtcgAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGa                                                         >  8:92872/1‑149 (MQ=255)                                                                                          tcgAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATGTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGAc                                                        >  7:266712/1‑149 (MQ=255)                                                                                                   tAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAAc                                                <  5:301016/148‑1 (MQ=255)                                                                                                   tAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCATTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAAcc                                               >  7:59911/1‑149 (MQ=255)                                                                                                     aCCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAAccgc                                             <  6:282570/149‑1 (MQ=255)                                                                                                     aCCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAAccg                                              <  7:101828/148‑1 (MQ=255)                                                                                                       cAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGtggccattggttacaccctcgacgagctgcagaacgacatcactggcggtcgcaccccagcgtccttcgaaccttcgatcgactacgtcgtcaccaagctgccacg                                            <  6:49418‑M2/148‑107 (MQ=255)                                                                                                          tGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGtggccattggttacaccctcgacgagctgcagaacgacatcactggcggtcgcaccccagcgtc                                                                                      >  3:229936‑M2/1‑39 (MQ=255)                                                                                                          tGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGtggccattggttacaccctcgacgagctgcagaacgacatcactggcggtcgcaccccagcgtc                                                                                      <  4:229936‑M2/103‑65 (MQ=255)                                                                                                            gCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTc                                      <  4:169406/149‑1 (MQ=255)                                                                                                              cAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCca                                    >  3:179578/1‑149 (MQ=255)                                                                                                                  ttGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACAcc                                >  5:257854/1‑149 (MQ=255)                                                                                                                    ggcggcGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCAGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCg                               <  4:150443/148‑1 (MQ=255)                                                                                                                      cggcgATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGAtt                            >  4:163171/1‑149 (MQ=255)                                                                                                                            tCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGATTTCACgc                      >  3:191293/1‑149 (MQ=255)                                                                                                                                ggCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAAccgc                                             <  3:136650/122‑1 (MQ=255)                                                                                                                                ggCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAAccgc                                             >  4:136650/1‑122 (MQ=255)                                                                                                                                  cGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGATTTCACgc                      <  8:218924/143‑1 (MQ=255)                                                                                                                                  cGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGATTTCACgc                      >  7:218924/1‑143 (MQ=255)                                                                                                                                    aTCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAAccgc                                             <  5:168820/118‑1 (MQ=255)                                                                                                                                    aTCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAAccgc                                             >  6:168820/1‑118 (MQ=255)                                                                                                                                       gggAAGCCGTGGGCCTTGGAGGGCAGGGCTGACGAACGCGACACTCGCGGGATCATCTCGATGACAACCATGGGGCCGGTGTTCGTGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGATTTCACGCAGCACCGCCa            <  3:4070/148‑1 (MQ=255)                                                                                                                                       gggAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGATTTCACGCAGCACCGCCa            <  3:43850/148‑1 (MQ=255)                                                                                                                                       gggAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCAGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGATTTCACGCAGCACCGCCAg           <  5:129255/149‑1 (MQ=255)                                                                                                                                        ggAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGATTTCACGCAGCACCGCCAGc          >  3:123512/1‑149 (MQ=255)                                                                                                                                                gTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAAACGCCGGTTTCCACACCGATTTCACGCAGCACCGCCAGCGAGGCGtt  <  7:272956/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     CGAAGCGTGGCAGCTTGGTGACGACGTAGTCGATCGAAGGTTCGAAGGACGCTGGGGTGCGACCGCCAGTGATGTCGTTCTGCAGCTCGTCGAGGGTGTAACCAATGGCCAGCTTGGCGGCGATCTTGGCGATCGGGAAGCCGGTGGCCTTGGAGGCCAGGGCGGACGAACGCGACACGCGCGGGTTCATCTCGATGACAACCATGCGGCCGGTGTTCGGGCAAATGCCGAACTGGACGTTGGAACCGCCGGTTTCCACACCGATTTCACGCAGCACCGCCAGCGAGGCGTT  >  NC_002947/5370841‑5371132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.