New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5761802	58 (1.190)	4 (0.090)	4/250	NT	7.5%	coding (854/1536 nt)	gpmI	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase
	?	NC_002947	= 5761832	43 (0.920)					coding (884/1536 nt)	gpmI	2,3‑bisphosphoglycerate‑independent phosphoglycerate mutase

GATGGCGATGCCGTGATTTTCATGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCACCTTCTTCTTCTCGG  >  NC_002947/5761693‑5761975                                                                                                                                            |                                                                                                                                                gATGGCGATGCCGTGATTTTCATGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCg                                                                                                                                          >  1:14164/1‑147 (MQ=255) gATGGCGATGCCGTGATTTTCATGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGaa                                                                                                                                        <  1:61443/149‑1 (MQ=255) gATGGCGATGCCGTGATTTTCATGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGaa                                                                                                                                        <  3:240297/149‑1 (MQ=255)       gATGCCGTGATTTTCATGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACACAGTATTCGGCGAAGATccc                                                                                                                                  >  4:3520/1‑149 (MQ=255)        aTGCCGTGATTTTCATGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCg                                                                                                                                 <  7:113144/149‑1 (MQ=255)             gTGATTTTCATGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGTCGGCGTACATCGGCCTGACCCAGTATTCGTCTAAGATCCCGGCAc                                                                                                                             >  2:133513/1‑148 (MQ=255)             gTGATTTTCATGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGACTGACACAGTATTCGGCTAAGATCCCGGCAc                                                                                                                             >  2:81071/1‑148 (MQ=255)                      aTGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCtt                                                                                                                   <  4:285778/149‑1 (MQ=255)                      aTGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCtt                                                                                                                   <  7:58664/149‑1 (MQ=255)                      aTGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCtt                                                                                                                   <  3:26561/149‑1 (MQ=255)                         aaCTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGc                                                                                                                <  2:14164/149‑1 (MQ=255)                          aCTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGATGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCt                                                                                                               <  1:90810/149‑1 (MQ=255)                            ttCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGAGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTcc                                                                                                             <  8:225377/149‑1 (MQ=255)                                      aCCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGcc                                                                                                     >  4:59401/1‑147 (MQ=255)                                      aCCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGcc                                                                                                     <  3:59401/147‑1 (MQ=255)                                                cgAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGc                                                                                         >  8:245154/1‑149 (MQ=255)                                                 gAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCt                                                                                        >  1:30504/1‑149 (MQ=255)                                                  aGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTg                                                                                       <  2:30504/149‑1 (MQ=255)                                                              cATTCGTAGAGACAGACTTCACGTAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCATCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCtt                                                                           <  6:108324/149‑1 (MQ=255)                                                               aTTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTg                                                                          <  1:81071/149‑1 (MQ=255)                                                               aTTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTg                                                                          >  7:128001/1‑149 (MQ=255)                                                                   gTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTg                                                                                       >  1:125238/1‑132 (MQ=255)                                                                   gTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTg                                                                                       <  2:125238/132‑1 (MQ=255)                                                                       agCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGc                                                                                                                <  2:165952/103‑1 (MQ=255)                                                                          cAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGc                                                               <  6:141714/149‑1 (MQ=255)                                                                                  aCGTAATTCGCCCGTGCGCGCCTTCCGAAGATGGCGGCTTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGAccc                                                        <  7:108319/148‑1 (MQ=255)                                                                                  aCGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCa                                                       >  4:171002/1‑149 (MQ=255)                                                                                   cGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCt                                                                            >  8:68364/1‑127 (MQ=255)                                                                                   cGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCt                                                                            <  7:68364/127‑1 (MQ=255)                                                                                   cGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAg                                                      <  4:257153/149‑1 (MQ=255)                                                                                     gAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCt                                                    >  3:120713/1‑149 (MQ=255)                                                                                             ccGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTAttcggcaggcgcgcacgggcgaattccgtgaagtctggctctacgaatgcacgcgacagctcgcgagcacggtcggcgcggaagttcatgaaaatcacgg                                             <  4:53917‑M2/148‑101 (MQ=255)                                                                                              cGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGc                                           <  8:128001/149‑1 (MQ=255)                                                                                                 gcgcgcCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATc                                             <  6:284162/144‑1 (MQ=255)                                                                                                 gcgcgcCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATc                                             >  5:284162/1‑144 (MQ=255)                                                                                                     gcCTGCCGAAGATGGCGGCGTACATCGGCCTGTCCCAGTAttcggcaggcgcgcacgggcgaattccgtgaagtctggctctacgaatgcccgcgccagctcgcgagcacggtcggcgcggaagttcatgaaaatcccggcatagccat                                    <  3:72806‑M2/149‑110 (MQ=255)                                                                                                        tGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTAttcggcaggcgcgcacgggcgaattccgtgaagtctggctctacgaatgcacgcgacagctcgcgagcacggtcggcgcggaagttcatgaaaatcacggcatcgccatctt                                 <  5:225465‑M2/149‑113 (MQ=255)                                                                                                           cGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGAcc                                                         >  3:224070/1‑122 (MQ=255)                                                                                                           cGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGAcc                                                         <  4:224070/122‑1 (MQ=255)                                                                                                            gAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGaaa                              >  6:86380/1‑148 (MQ=255)                                                                                                                    cggcgTACATCGGCCTGACCCAGTATTAGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAATAACGTGCTGGGCGAATACATTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCTAGAAATACGACCAc                     >  8:180537/1‑149 (MQ=255)                                                                                                                        gTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCa                 >  6:165626/1‑149 (MQ=255)                                                                                                                           cATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCACct              >  8:239147/1‑149 (MQ=255)                                                                                                                            aTCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCAc                     >  2:153934/1‑141 (MQ=255)                                                                                                                            aTCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCAc                     <  1:153934/141‑1 (MQ=255)                                                                                                                               ggCCTGACCCAGTAttcggcaggcgcgcacgggcgaattccgtgaagtctggctctacgaatgcacgcgacagctcgcgagcacggtcggcgcggaagttcatgaaaatcacggcatcgccatcttcgaccttgacggcttcgccaat           >  6:225465‑M2/1‑14 (MQ=255)                                                                                                                               ggCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCACcttctt          >  2:130766/1‑149 (MQ=255)                                                                                                                                gCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCACcttcttc         >  5:188643/1‑149 (MQ=255)                                                                                                                                gCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCACcttcttc         <  2:4466/149‑1 (MQ=255)                                                                                                                                      cccAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCACCTTCTTCTTCTCg   <  5:86380/149‑1 (MQ=255)                                                                                                                                         aGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCACCTTCTTCTTCTCgg  >  4:32681/1‑147 (MQ=255)                                                                                                                                         aGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCACCTTCTTCTTCTCgg  <  3:32681/147‑1 (MQ=255)                                                                                                                                            |                                                                                                                                                GATGGCGATGCCGTGATTTTCATGAACTTCCGCGCCGACCGTGCTCGCGAGCTGTCGCGTGCATTCGTAGAGCCAGACTTCACGGAATTCGCCCGTGCGCGCCTGCCGAAGATGGCGGCGTACATCGGCCTGACCCAGTATTCGGCGAAGATCCCGGCACCAGCAGCCTTCGCTCCGTCCAGCCTGAACAACGTGCTGGGCGAATACCTTGCAAAAAACGGCAAGACCCAGCTGCGCATCGCCGAAACCGAGAAATACGCCCACGTCACCTTCTTCTTCTCGG  >  NC_002947/5761693‑5761975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.