New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5817241	58 (1.190)	5 (0.110)	5/250	NT	8.9%	coding (713/1011 nt)	pilT	twitching motility protein
	?	NC_002947	= 5817265	47 (1.010)					coding (689/1011 nt)	pilT	twitching motility protein

CCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCC  >  NC_002947/5817117‑5817407                                                                                                                                                     |                                                                                                                                               cccACCCCCTACGCGCCTGACCAGCAACTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAAAGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTAGCCGAACGCGCATGCACGGTTg                                                                                                                                                >  7:46683/1‑149 (MQ=255)       cccTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGccagca                                                                                                                                          <  3:196595‑M2/149‑7 (MQ=255)        ccTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCAc                                                                                                                                         >  7:201795/1‑149 (MQ=255)         cTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCAc                                                                                                                                         >  2:17055/1‑148 (MQ=255)         cTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCAGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCAcc                                                                                                                                        <  3:215277/149‑1 (MQ=255)           aCGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAg                                                                                                                                      >  2:19741/1‑149 (MQ=255)            cgcgCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAg                                                                                                                                      <  1:35254/148‑1 (MQ=255)                 cTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGccc                                                                                                                                <  8:201795/149‑1 (MQ=255)                   gACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCgg                                                                                                                              >  8:152679/1‑149 (MQ=255)                            cTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCcg                                                                                                                     >  4:231102/1‑149 (MQ=255)                                gcgACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCcgcgcg                                                                                                                 >  2:303047/1‑149 (MQ=255)                                    ccaccaGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAgg                                                                                                             <  3:150859/149‑1 (MQ=255)                                          ggCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAgg                                                                                                       <  4:50595/149‑1 (MQ=255)                                           gcgcAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGc                                                                                                      >  7:214696/1‑149 (MQ=255)                                               aGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAAt                                                                                                  <  4:196595/149‑1 (MQ=255)                                               aGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAAt                                                                                                  <  1:19741/149‑1 (MQ=255)                                                gCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGTCAGCACCAGGTGCCCGGTTTCGGCTGCGCGCAGGGCCAGGCGAATg                                                                                                 <  8:46683/149‑1 (MQ=255)                                                  gACTCCGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGt                                                                                               <  1:303047/149‑1 (MQ=255)                                                     tCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTc                                                                                            >  8:179432/1‑149 (MQ=255)                                                       ggCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCa                                                                                          <  8:214696/149‑1 (MQ=255)                                                       ggCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCa                                                                                          <  1:17055/149‑1 (MQ=255)                                                       ggCCAGCATCGCCCGCACCAACGGCATATCCTCGGCAGCACACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGCTTCCCAGCCCCCGGTGCCCGGTTTCGGCCCCGCGCAGGGCCAGGCGAATGCTTTc                                                                                            >  7:279370/1‑147 (MQ=255)                                                         ccAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAgg                                                                                        <  6:235821/149‑1 (MQ=255)                                                              aTCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTcgcg                                                                                   <  7:179432/149‑1 (MQ=255)                                                                   ccGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAAc                                                                               >  3:275050/1‑148 (MQ=255)                                                                       aCCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAAc                                                                               <  5:110064/144‑1 (MQ=255)                                                                       aCCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAAc                                                                               >  6:110064/1‑144 (MQ=255)                                                                         cAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGa                                                                        >  3:34690/1‑149 (MQ=255)                                                                          aaCGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGtt                                                                                              <  4:246362/126‑1 (MQ=255)                                                                          aaCGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGtt                                                                                              >  3:246362/1‑126 (MQ=255)                                                                          aaCGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGAt                                                                       >  6:312219/1‑149 (MQ=255)                                                                              gCTTTTGCTGGGCAGGAAACTGCTCCACCCTCCTGTCGCTGCTGCTGGGCGCTGTACGCGCATGCACGGCTGCCAGCACCAGGTGCCCGGTTTCGGGCGGGCGCAGGGGCAGGGGAATGGTTTCCTGGTCGCGCAACTCGCCGatgatg                                                                   <  8:279370/149‑1 (MQ=255)                                                                               cTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGa                                                                  <  3:30203/149‑1 (MQ=255)                                                                                      tCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTc                                                           >  3:80455/1‑149 (MQ=255)                                                                                          cagcaAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCgg                                                                                                                        >  3:54700/1‑84 (MQ=255)                                                                                          cagcaAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCgg                                                                                                                        <  4:54700/84‑1 (MQ=255)                                                                                                  acCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCg                                                         <  5:19290/139‑1 (MQ=255)                                                                                                  acCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCg                                                         >  6:19290/1‑139 (MQ=255)                                                                                                    cTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACt                                                                              >  7:67708/1‑116 (MQ=255)                                                                                                    cTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACt                                                                              <  8:67708/116‑1 (MQ=255)                                                                                                       caccaACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGgcgcagcg                                          <  3:231102/149‑1 (MQ=255)                                                                                                        accaACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGa                                                                  <  7:74891/124‑1 (MQ=255)                                                                                                        accaACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGa                                                                  >  8:74891/1‑124 (MQ=255)                                                                                                          caACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCAc                                       >  7:53435/1‑149 (MQ=255)                                                                                                          caACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCAc                                       >  2:50652/1‑149 (MQ=255)                                                                                                              cTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTgcg                                   <  7:152679/149‑1 (MQ=255)                                                                                                                gTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGc                                                                                                                       <  6:134321/63‑1 (MQ=255)                                                                                                                gTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGc                                                                                                                       >  5:134321/1‑63 (MQ=255)                                                                                                                 tCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTgcgc                                  <  4:80455/147‑1 (MQ=255)                                                                                                                   gATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGcc                              >  3:212422/1‑149 (MQ=255)                                                                                                                   gATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGcc                              >  8:285552/1‑149 (MQ=255)                                                                                                                      gctgctGGTCGCCGAACGCGCATGCACGGTTGccagcagcatcgacaggttggtggaggtgtttgctgccgaggaaaagccgttggtgcgggcgatgctggccgagtcgctgcgcctggtggtcgc                                                  <  2:271474‑M2/126‑95 (MQ=255)                                                                                                                      gctgctGGTCGCCGAACGCGCATGCACGGTTGccagcagcatcgacaggttggtggaggtgtttgctgccgaggaaaagccgttggtgcgggcgatgctggccgagtcgctgcgcctggtggtcgc                                                  >  1:271474‑M2/1‑32 (MQ=255)                                                                                                                        tgctgGTCGCCGAACGCGCATGCACGGTTGccagcagcatcgacaggttggtggaggtgtttgctgccgaggaaaagccgttggtgcgggcgatgctggccgagtcgctgcgcctggtggtcgcgcaggtgctgggcaggcgcgtaggc                         <  5:198159‑M2/149‑120 (MQ=255)                                                                                                                        tgctgGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGa                         <  4:34690/149‑1 (MQ=255)                                                                                                                             gTCGCCGAACGCGCATGCACGGTTGccagcagcatcgacaggttggtggaggtgtttgctgccgaggaaaagccgttggtgcgggcgatgctggccgagtcgctgcgcctggtggtcgcgcaggtgctggtcaggcgcgtagggggtg                     >  6:36525‑M2/1‑25 (MQ=255)                                                                                                                             gTCGCCGAACGCGCATGCACGGTTGccagcagcatcgacaggttggtggaggtgtttgctgccgaggaaaagccgttggtgcgggcgatgctggccgagtcgctgcgcctggtggtcgcgcaggtgctggtcaggcgcgtagggggtg                     <  5:36525‑M2/148‑124 (MQ=255)                                                                                                                                       gcgcATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTa          >  2:164787/1‑149 (MQ=255)                                                                                                                                               aCGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCACAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGccc  <  1:290126/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               CCCACCCCCTACGCGCCTGACCAGCACCTGCGCGACCACCAGGCGCAGCGACTCGGCCAGCATCGCCCGCACCAACGGCTTTTCCTCGGCAGCAAACACCTCCACCAACCTGTCGATGCTGCTGGTCGCCGAACGCGCATGCACGGTTGCCAGCACCAGGTGCCCGGTTTCGGCCGCGCGCAGGGCCAGGCGAATGGTTTCCAGGTCGCGCAACTCGCCGATCATGATCACGTCCGGGTCCTGGCGCAGCGCACTGCGCAGCCCCTGAGCAAAGCCGCGACTATGGCGCCC  >  NC_002947/5817117‑5817407

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.