New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 5903760 = | 45 (0.920) | 5 (0.110) | 3/242 | NT | 11.0% | intergenic (+16/+91) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
? | NC_002947 | 5903842 = | 39 (0.860) | intergenic (+98/+9) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
TTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTACCAGACGAAGAAG > NC_002947/5903694‑5903989 | ttGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGaaa < 7:12517/149‑1 (MQ=255) ttGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGaaa < 2:224478/149‑1 (MQ=255) gTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAgg > 1:210733/1‑148 (MQ=255) gTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAgg < 2:210733/148‑1 (MQ=255) gTCAGAAGTATCAGGGACTATCCACATGGGGATGGGGTATGGCTTTTATGCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACCGGGCTCACCACACCCCTTATGGCTGTGAGGTCCCTGTGGGAGCGGGCGGGCCCGCGAAAgg < 4:295773/148‑1 (MQ=38) tCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCGCCCACCGGGCTCACCACCACCCTGAAGGCGGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGGCAgg > 2:76296/1‑149 (MQ=39) tCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCCCGGGCATGCCCGCTCCCCCAGGGCTCACCCCAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAgg > 2:30334/1‑149 (MQ=255) ggACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCCATCCCCCACCCCCACGGCTGACCACCACCCAGAACGGGGGGAGGTGCCTGTGGGGGCCGGCGTGCCCGCGCAAAGGCCCCGTGCGGCCGa > 2:271622/1‑149 (MQ=255) ggACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGa > 2:210367/1‑149 (MQ=255) cTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCGGTGGGAGCGGGCGTGCCCGCCCAAGGGCCACGTCAGGCCGACGc > 6:66480/1‑149 (MQ=255) aTCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTAGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCACCGAAAGGGCCAGGTCAGGCCGACGCAg > 5:168535/1‑149 (MQ=255) tCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTTTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGc > 1:36311/1‑149 (MQ=255) aTTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCt < 3:41828/149‑1 (MQ=255) ggttggggtttgggtttgAATCGGTGCTGGAGCTTTAGCGGTCTTGCCCGCTCCCACAGGGGTCACCACAACCTTGATGGCTGTGTGGTCGCTGTGGTTGGGGGGGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTgcgc < 6:168535/143‑1 (MQ=255) tGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTg < 7:232466/149‑1 (MQ=255) gCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGa < 5:66480/148‑1 (MQ=255) tttGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCt > 6:305068/1‑149 (MQ=255) aGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGtt < 1:30334/149‑1 (MQ=255) ccTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTgg < 1:271622/149‑1 (MQ=255) TTCGCGGGCATGCCCGCTCCCACAGGGCTCCCCACAACCCTGAAGGCTGTGAGGTCCCTGGGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGCCGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCt < 5:22637‑M1/149‑1 (MQ=255) CATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTgg < 1:134553‑M1/139‑1 (MQ=255) CATGCCCGCCCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTgg > 2:134553‑M1/1‑139 (MQ=255) ATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCAcc < 8:228619‑M1/148‑1 (MQ=255) gCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCctc > 2:80951/1‑149 (MQ=255) cgctcccacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcatgcccgcgaaAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTc > 8:263192‑M2/69‑149 (MQ=255) cGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGTCCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTc < 1:210367/149‑1 (MQ=255) gCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAgg < 3:137881/81‑1 (MQ=255) gCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAgg > 4:137881/1‑81 (MQ=255) cccACAGGGCTCACCACAACCCTGAAGGCTGGGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCTCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGAt < 1:76296/149‑1 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATc < 1:80951/148‑1 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATc < 7:279490/148‑1 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCg > 7:198487/1‑149 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCg > 7:157551/1‑149 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCg > 1:71375/1‑149 (MQ=255) ccACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCg > 1:69773/1‑149 (MQ=255) cacagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcatgcccgcgaaAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGc > 3:266576‑M2/63‑149 (MQ=255) cacaGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGc < 7:228619/149‑1 (MQ=255) acagggacctcacagccttcagggttgtggtgagccctgtgggagcgggcatgcccgcgaaAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGcc > 1:143241‑M2/62‑149 (MQ=255) acaGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGcc > 2:109409/1‑149 (MQ=255) caGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCct > 5:148893/1‑149 (MQ=255) aGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCctg < 6:148893/149‑1 (MQ=255) accacAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAAt < 1:109409/148‑1 (MQ=255) acaacaACCCTTATGGCTGTGTGGTCGTTGTGGGTGGGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATc < 6:22637/146‑1 (MQ=255) cacaACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGc < 3:174390/149‑1 (MQ=255) acaACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGcc < 2:36311/149‑1 (MQ=255) caACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCt < 7:140588/149‑1 (MQ=255) aCCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTg < 2:69773/149‑1 (MQ=255) cccTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGc > 2:127160/1‑149 (MQ=255) tgtgAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCtt < 6:120605/137‑1 (MQ=255) tgtgAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCtt > 5:120605/1‑137 (MQ=255) tgagccctgtgggagcgggcgtgcccgcgaaAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCg > 2:35346‑M2/32‑149 (MQ=255) ctttcgcgggcacgcccgcgaaAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTggcgg > 7:34671‑M2/23‑149 (MQ=255) ggAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCt < 8:157551/149‑1 (MQ=255) ggCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTa < 8:198487/149‑1 (MQ=255) gCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAc > 6:206544/1‑149 (MQ=255) gCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTAc > 2:306017/1‑149 (MQ=255) cGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGcg < 8:82311/117‑1 (MQ=255) aAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTACCAGACGaagaag < 5:305068‑M2/148‑1 (MQ=255) | TTGGTCAGAAGTATCAGGGACTATCCACATTGGGATGCGGTATGGCTTTGAATCGGTGCTGGAGCCTTCGCGGGCATGCCCGCTCCCACAGGGCTCACCACAACCCTGAAGGCTGTGAGGTCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGC‑CGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTACCAGACGAAGAAG > NC_002947/5903694‑5903989 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |